7000000395: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 764083206

Overview

Basic Information

• IMG/M Taxon OID: 7000000395
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052940 | Ga0031055
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 764083206
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 90708913
• Sequencing Scaffolds: 25
• Novel Protein Genes: 28
• Associated Families: 24

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	8
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria	5
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas bobii	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium 3519-10	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces → Actinomyces urogenitalis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F027205	Metagenome	195	N
F030786	Metagenome	184	N
F036281	Metagenome	170	N
F041827	Metagenome	159	Y
F042387	Metagenome	158	N
F047127	Metagenome	150	N
F047508	Metagenome	149	N
F049707	Metagenome	146	N
F059076	Metagenome	134	N
F063777	Metagenome	129	N
F063778	Metagenome	129	Y
F064818	Metagenome	128	N
F064819	Metagenome	128	N
F071327	Metagenome	122	N
F074985	Metagenome	119	N
F080165	Metagenome	115	N
F081456	Metagenome	114	N
F090516	Metagenome	108	N
F090517	Metagenome	108	N
F095632	Metagenome	105	N
F101360	Metagenome	102	N
F103434	Metagenome	101	N
F103436	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
C2632953	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	688
C2677172	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	1724
C2677932	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1810
C2680598	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2258
C2684676	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	5042
SRS019077_WUGC_scaffold_13166	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	42999
SRS019077_WUGC_scaffold_19676	All Organisms → cellular organisms → Bacteria	16955
SRS019077_WUGC_scaffold_22199	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	4797
SRS019077_WUGC_scaffold_22650	All Organisms → cellular organisms → Bacteria	5511
SRS019077_WUGC_scaffold_2293	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas bobii	645
SRS019077_WUGC_scaffold_24999	All Organisms → Viruses → Predicted Viral	1632
SRS019077_WUGC_scaffold_31838	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	15468
SRS019077_WUGC_scaffold_32298	All Organisms → cellular organisms → Bacteria	3372
SRS019077_WUGC_scaffold_32621	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum	6490
SRS019077_WUGC_scaffold_3672	All Organisms → cellular organisms → Bacteria	23305
SRS019077_WUGC_scaffold_37947	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	6608
SRS019077_WUGC_scaffold_42737	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	2185
SRS019077_WUGC_scaffold_4994	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	3230
SRS019077_WUGC_scaffold_50534	All Organisms → cellular organisms → Bacteria	751
SRS019077_WUGC_scaffold_56407	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	9547
SRS019077_WUGC_scaffold_60999	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1038
SRS019077_WUGC_scaffold_61623	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium 3519-10	11132
SRS019077_WUGC_scaffold_62117	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	871
SRS019077_WUGC_scaffold_66589	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces → Actinomyces urogenitalis	2594
SRS019077_WUGC_scaffold_66629	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1157

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2632953	C2632953__gene_156818	F081456	MFEEPPIYYILISLIFLIVFGAISFATWLVWLTNVALFVKLVITAIGALFAAMTVILYTISAE
C2677172	C2677172__gene_173142	F063778	QKLLQQLQNALGLVADADTSAHDVAAITQSAADGHQLTEVMLQQMTAIEAYLKNCQVSINDAMGNIEAIPLDPPPED
C2677932	C2677932__gene_173470	F101360	VRKEDALRRAVIAAHVAKVASQEKKKALKELEEVMAPGDSSKPSIDGRQIGTVSVSAPQPRYQVVDEKALVAWLEWNKPDAVHKIPAPWFVAATSLDGFIKQTGEIPDGVELVTPDPRISARVSPAQEEAIRELITMGDISLIEIENTE
C2680598	C2680598__gene_174683	F081456	LGYRLFLEKGAHMFEEPPIYYILISLIFLIVFGAVAFATWLVWLTSIAFFAKLVMTAIGFLLCAITVILYTISAE
C2684676	C2684676__gene_176733	F049707	MGNYLPRSSVVSEYRSPHNDGHDPYILIWEYGNDIRRAEFTERWAEYDETGWTVWYFRLVDGGVMTFSAREWEQKDDVNHLTTIWMRPSLYDIERKIN
SRS019077_WUGC_scaffold_13166	SRS019077_WUGC_scaffold_13166__gene_14826	F101360	MSKEDALRRAVVAAHVAKVASQEKKRALAELEEVMAPGDTSRPMIDGLQVGTVSVSAPAPKYQVVDERALVAWLEWNKPDAVHKVPAPWFTAAAALDGFIKQTGEIPDGVEVVQGDPRISVRISTAQADAIQELIASGDIRMIEVGGD
SRS019077_WUGC_scaffold_19676	SRS019077_WUGC_scaffold_19676__gene_22821	F064818	MDKDEFLKKLIAFIADNSSELHPKVFKNKIRFGINKSSYTEMRFDYSQNYKGFYLQLASYNKDVGDFFEQEMGNAFLKMLEDESKEFRNLFFTQNSFQLSHYYYGFPIMTNNDTGHLYPEMGTTIFNDVLRNLQANHFKFIQAAEVLSPDLLHYIKRFPSCFFNTALVALLIIEKNLLSLDDERVQGLFEYDNIVTKNECKLFSPFDLIFGKKDYQQTAKQRILQRK
SRS019077_WUGC_scaffold_22199	SRS019077_WUGC_scaffold_22199__gene_26449	F027205	VASRLIVSADDILKAVKESEEFERKALSEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVRLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYILDEYDIPRRIRK
SRS019077_WUGC_scaffold_22650	SRS019077_WUGC_scaffold_22650__gene_27073	F041827	MKHFLSALALGCLLLSCNRDLENNETPAPPQKEKLVLLKQLSEGSTVTFQYKNGNEIESVNIDGVGKSDIDYEYDTYGRIVKERRFHRRYDYGETNITYQYDNQGRLVSSHAISTKFYPGTGLTPRCSVEKKHTYTYQGNKVTVKIEMGADTCSAIPETGKEKTITLLVENGRVTKTFDEQGNIEQTIEYYNTKNALRNIKGFPALVVEFYIRPLTYELPYYNLGIQRIEDLRYIDNIKTRDFHNGSYWEYRYSYDNGSTDNDYPNGVGIHARSHNDPTYDEYLYEISADRSYIKEE
SRS019077_WUGC_scaffold_2293	SRS019077_WUGC_scaffold_2293__gene_2014	F090517	LGLLFLASSCKNKKDTPRLEFSSVELRQTVWNGTLEYKNAKRGSYSVYLNFLSDSEVEVSAYDSKDPTASYIVQADCFYTITDRIFTLKTQGDRELHPSMDQNAWYLIRKEPSLLVFQAN
SRS019077_WUGC_scaffold_24999	SRS019077_WUGC_scaffold_24999__gene_30176	F027205	ILKAVKESEEFEKKALSEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYILDEYDIPRRIKRSAK
SRS019077_WUGC_scaffold_24999	SRS019077_WUGC_scaffold_24999__gene_30177	F036281	MITLIKVDEGPVDIYELRMQYLAKLKETDGVMLPKFIYRNRELFVTEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKIYNAKEYYDYWAAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAERETGHWYTFRMSDAQKSKFTRHTITNEKGHQSYDWVLKDVEWAADTIRYF
SRS019077_WUGC_scaffold_24999	SRS019077_WUGC_scaffold_24999__gene_30178	F074985	MELTDGGWYKTPRIIKGKDFLAHIHDTYASGNAMYVEFKASEGEVRILEYKQLYDVDTESAVLFTINTYPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRINLEQFDQIWLDQTFQKLHPVIVNHDGKFWHVMGLKLDVDADGSFWGLYLKRQDSDFMKEIRMPLTQKFLYNPISGSWSLDDPTQEIKDLEEIKQALRADAILDVTVSGVPMKLIRVQEIAKGVLFFVF
SRS019077_WUGC_scaffold_31838	SRS019077_WUGC_scaffold_31838__gene_39401	F047127	MKKTFAFILLSIISLAKAQLTDIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERREAVRLWDKDIFYLEFTDRKMNKRVFRQMPELKKNGKLFEIMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIVNIPVKGRYKKKLKALLSDKPEIAKEVDRMVGDSDIREILEKYNSK
SRS019077_WUGC_scaffold_32298	SRS019077_WUGC_scaffold_32298__gene_40027	F030786	MLVVMIVTSSLQLLLKNGSATKGGNATGAKKANKISFADITDGDKSKVVAIKVKYFDDEGADKIFENNNNRILNTINSQHISYNSQSAEYSKPRLFLLYQSLKVDC
SRS019077_WUGC_scaffold_32621	SRS019077_WUGC_scaffold_32621__gene_40613	F063777	LKVLNIKISALPPENNSFWMKLLLYLCIPFLFIFGILLLIGWGIYSGISSIISAVKEDFFGIKDKTNIKTSKNILFENEQFKLKKEDYLPDENSQEYKIFDDFCAKSNEHLDDDGYIFYKLTDEKSATDLNGAIISEFQEDIGNYILLQNLILEDNQLKNQLISFNKNTGKITVLADIKDFFWLEFDSETKTINGYNNKEQIEISISE
SRS019077_WUGC_scaffold_3672	SRS019077_WUGC_scaffold_3672__gene_3582	F080165	MKNKKFLLAILLSLTACNNKTKTISTLDLEKTIIDYKDLPSKVKERVFYGEAMKLGEEDEERFQDFQETNNPKKYEYYTKHDPLLAWVHAPYIRNKKTKQEYFIYEDGPMGGRYIIYGDSLYISNHYNIYEEDSLRYTFTRYILR
SRS019077_WUGC_scaffold_37947	SRS019077_WUGC_scaffold_37947__gene_48043	F064819	MILKDNQGKDRIKFSDIVRLNKEEPVFIKMKVRISTETIVSEENLDIERSDLEDLMRNLKDLCEYKIRKFFFQNIDETIEIVFSINDIGTIAVEGKMYDENYMNSVNFSFQTDLNGIVTFSKEISQEIEKCK
SRS019077_WUGC_scaffold_39550	SRS019077_WUGC_scaffold_39550__gene_50292	F059076	MTNRILLLGLLLGGVSINAQNINEINAAGKTKQKVGINTTIPTRTLTIKNATADKGKPVLRLVDAPVYSKNVNSDMDADLGGNTATSTNYTDYRPLVVDKVGDVYQGLPIHNMSILTLTIENVDGDWISSFDTGIDHKKYAVAIMSAFFKLPAKSGNDLVMLTGNTGVPNAKNGTLDSPTSARIAPPTVILKKAGNNWAIEADYDNMTPEKFEKNKPERGVSSNVNGSWVISLLVGRRDAINFTELNFNQGGSSIGNGPGNSTYTTQLQNFLQKLE
SRS019077_WUGC_scaffold_42737	SRS019077_WUGC_scaffold_42737__gene_54924	F042387	MKRIILFFMAGFFLVSCSRENDKMTDETLANSAKMQLPTKVTIAENKKVISKRFEYQNDNELKEIIDEGSGERIVFVYEKDFITSKIRYSQAGEELGKANYQYNNGKLSSVIDEVVISDSGIQYKRVVTREYHYNGSEVSVNENIKYHSESYAYNLRDENFTHTYVLNGENITKIHHEISKNVPGGYFYLNPNNMVVVDEEVTYDAKNSPYKNIKGFSVLAVEFCGLDEDENTIADYLNFRWVSHNPTLIQKSTNLYGSGADSSEYKFQYEYKNNFPIKTRLNIDNQAVTTMVYEYNK
SRS019077_WUGC_scaffold_4994	SRS019077_WUGC_scaffold_4994__gene_5153	F071327	MEELFNSVYSTHKGISFSTVVVFGAFIFLLLQVHLSYKGRISDVLRKTSFFSMILLYIQGILGVFLGIYSPEFSETSGFSSFFKLFEYGIIILTCAGMITYVYMFLKNNQILTLKMLIIALVAALLFEYAYPWRLIFG
SRS019077_WUGC_scaffold_50534	SRS019077_WUGC_scaffold_50534__gene_66303	F047508	AIATDAVLVIEFVGEPIHIGMLGHRLVEGRVKYPYLRSIGEYLRHSFDTEDVGWVVKRSKLCALMEHIYYLWGDTYALSKALCTVYEAVTDGVDLIEGLYEVLFFENVEDNLYAACVVRNVKVALNLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELNEGELQGGAATVEDQDFHKVLYYMVRCELILSSP
SRS019077_WUGC_scaffold_56407	SRS019077_WUGC_scaffold_56407__gene_75257	F095632	MTMSFKETTGYKVVSLVASTSASITAGAVVGALCPPAGVVLTAIYGLGSSVLGTYVGDKAGRQYAETLAETIDSIKKPSTN
SRS019077_WUGC_scaffold_60999	SRS019077_WUGC_scaffold_60999__gene_82794	F018385	MMADLINSWLPYQELSIEKDRDPVLDDEIIYGNHVKHFTLTVYSPEGRVNKYWNARILKDQLGYCRVACPREKKILCFNWVNWTAYMFSHDGMNELVLMPDARRRTVSQLSFDNVPVKEV
SRS019077_WUGC_scaffold_61623	SRS019077_WUGC_scaffold_61623__gene_83931	F090516	MKSNLSLKLFLAFERYFIENDEVISLDKSSEFTDVIVGIGFLPHDMSENTDFKKKILKKYGFSSATALAEDFRKRVLNFDEPIPENFEKDGIGYVYTVISGYDVFYNRMYMFGIHCFNGDFNVTYYDLENDAETEDYYEEHELYSQVKGYRWLDPESDYYEDVLAWEALNKLATDIYFHLEDKLDVKIDIKPIPEEEKVVPTQKHLAKFLAFCGVEQDVIDENTERLLKALEEYTPDEYEGVSEAMAEMMEYSHKIQRAEPVIEIIREYGVCRSSDWKFYAEELEEYILDLADFSDWKWEYPADTYSADLFPYMRKQLSQYHLWLCHLDEGADAYLFLLFSEKDMPEIMKLARILDLPLKAYFK
SRS019077_WUGC_scaffold_62117	SRS019077_WUGC_scaffold_62117__gene_84776	F018385	MSGTETMMAENVNQWESYKELSIENDRDPVLDDPIIYGVNVKHFTLTVYSPEGRVSKYWNARILQDQLGRCRIACPRDGKILCFAWFEWTSYMFSHDGLNELVFMPRTNSRLPSTLWNTKEVK
SRS019077_WUGC_scaffold_66589	SRS019077_WUGC_scaffold_66589__gene_93521	F103434	MVTFRPRRGRYLENGPHAVEVTVAVVSEGRTGRRYTPGETFYVDKVLVQPSAGNALKGTENRAIRGDLTDETTLKIMGTGRKWPGGPHSWVKIIKGPPSLEGKTFQQAGEPLTYDASPMTRHFSVSCDTLGTVAK
SRS019077_WUGC_scaffold_66629	SRS019077_WUGC_scaffold_66629__gene_93599	F103436	MITTSKDGWCSKSDAEILNSLKDWVSRCDVKYVKSDALKKIDSAFALWANGQYVSALRLLDENEVFLKKSDWPYYALGIEILRVRKHEFLNE