7000000394: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 765620695

Overview

Basic Information

• IMG/M Taxon OID: 7000000394
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052939 | Ga0031287
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 765620695
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 109490424
• Sequencing Scaffolds: 19
• Novel Protein Genes: 20
• Associated Families: 20

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2
Not Available	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria → unclassified Neisseria → Neisseria sp. oral taxon 014	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	3
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032313	Metagenome	180	N
F033081	Metagenome	178	Y
F040149	Metagenome	162	N
F043990	Metagenome	155	N
F046432	Metagenome	151	Y
F051212	Metagenome	144	N
F054111	Metagenome	140	N
F057446	Metagenome	136	N
F061925	Metagenome	131	N
F061926	Metagenome	131	N
F061927	Metagenome	131	N
F063777	Metagenome	129	N
F064819	Metagenome	128	N
F067846	Metagenome	125	Y
F073671	Metagenome	120	N
F085820	Metagenome	111	N
F097490	Metagenome	104	N
F105376	Metagenome	100	N
F105378	Metagenome	100	N
F105380	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2669739	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	543
C2670557	Not Available	547
C2670699	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria → unclassified Neisseria → Neisseria sp. oral taxon 014	547
C2696269	Not Available	674
C2698229	All Organisms → cellular organisms → Bacteria	687
C2717490	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	862
C2718680	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	877
C2723400	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	942
C2724346	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	956
C2730724	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1069
C2733376	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1126
C2736858	All Organisms → cellular organisms → Bacteria	1212
C2740016	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1306
SRS019607_WUGC_scaffold_13832	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1465
SRS019607_WUGC_scaffold_16586	Not Available	4304
SRS019607_WUGC_scaffold_17433	Not Available	1161
SRS019607_WUGC_scaffold_27724	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2	30522
SRS019607_WUGC_scaffold_30703	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1540
SRS019607_WUGC_scaffold_57356	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae	11791

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2669739	C2669739__gene_134528	F046432	MWEMTENELSGIISKYQMPEGRYSVEQEGSFGESEFFWVIKNQLTNQKYLLMNTYSHHGVEDEVEYYREEGFDNLEAIPRRIETLENASDADDEISKYLFGMYSIF
C2670557	C2670557__gene_134856	F105376	MGKIMNEKPEVSAKEFGALQAKVEYIKDGVDKHTVMLERIENIARANVTQAQLAQHEKESEEKYVKRTEIEGVMNFWSLVTSNVAKLFAIALVGLAIYATNNLIQQNKAVTELQEEVQQSQVRRK
C2670699	C2670699__gene_134916	F061927	MKNPIFILSVILILGACSSESAKKAYNDSFRKTFIEEGVKSCIENSGLKESEAREYCECAMNKINENLSNDEIIDISMDNPPKDLDERIDKAISSCVENK
C2696269	C2696269__gene_145223	F085820	FFSCETVEPSPRPTWGEIVNPIEAFMYPRDLKVVAAREEGRRWLILVVPDSTKSSFAPTSKSTPAEVARYKELSKLVGNPTEPVVNECHFHRTWLTQGVKAIRVVRTQADGRDEEVTAQCGNLYFYTDKQIFDCQFKCGNRSIFAKPLGETVEADYLWLPGRDVFGLIAPPNPDHLKQRIVLRLADGTEIEKELSKKGKK
C2698229	C2698229__gene_146047	F061925	MSWEYSINLDSEESVSSVVADLKICKLFSSSTTDYIDWKNSEPIDDIPYDARFYTDKKKTIYIAINSFSKNIFSALKSILAKHDYHITDCDTDEEVTLEHIFRSVI
C2717490	C2717490__gene_154404	F061926	MIKTAKHIKTFLASVLLLIFVMNVSGLFVRLHHQETHQKTEKIAECSDKVCYHKAHLQTKSDCDCGFLCTLNYFYILPEKPQTEIHVNEYFSYFSLYKIFVSERIILLWQSRAPPVLS
C2718680	C2718680__gene_154975	F040149	VADEGAEELRWEVLIEEQGIPVLFVEVVAWYDGRVSSSEILRSVGIALEREPRLAPVWSHDSEDAIHDFIYDISVPKGHTLTAVRERETVVAQLLNIHRYVYYP
C2723400	C2723400__gene_157128	F064819	MILKDNQGKDRIKFSDIVRLNKEEPVFVKMKMRISTETMVSEENLDIERSDLEDLTRNLKDLSECKIRKFFFQNIDETIEIVFSINDIGTIAVEGKMYDESYMNSINFSFQTDLNGIAIFSKEISQELEKYK
C2724346	C2724346__gene_157569	F057446	NSISFGKTTITSYPEYFEITDNKKTSKLLYLSASLVFIAIYLFDLYQNDFDFGKVAHFKTISAVLWLVIFALQFWLINTESKIEKSKIKEVVVRKNRWTSIVIHYGDKKRKIDGFSQDEAEQIIKFLMNNR
C2730724	C2730724__gene_160570	F043990	MIKKLGIIFTFGVIILGIVVYANHKIERSAIEREFGVNMSNMNIDEKYRKEEWAPNGDGEKTIILTYDQLDSSFMKLNKLPIKEDLPPNGIPKQFLNIANGYYKYVVDENDDRSFDILIVDTTRKEICIYYQIL
C2733376	C2733376__gene_161831	F097490	LLCIISCSERKEIEVYNMKIDENKKEVLVEIRNNTENNYYLLSPIVSIMTKHLQYIDGEMIEGQIHHKKLDSIVCSVCIWDDICKEEYYAMRDIVLLPKKSVKKIKYKYDNEEYIEIETVHIGFPYNGYYNEIGKKMQFMLKKKLDSSNIIKGYEFYNKDIETMTIKM
C2736858	C2736858__gene_163632	F054111	MNKSLESITHEEFLKLMEHLKNLQEFTFLEYIIAPEADIFYFNFMEKTVKIKWDLDYGLFLETEELSTADRDLFLNILDKEILFLI
C2740016	C2740016__gene_165219	F063777	LKVLNIKISALPPENNSFWMKLLFYLCIPFLLIFGILLLIGWGIYSGISSIISAVKEDFFGIKDKTNIKTSKNILFENEQFKLKKEDYLPDENSQEYKIFDDFCAKSNEYLDDGYIFYKLTDEKSATDLNGAIISEFQEDIGNYILLQNLILENNQLKNQLISFNKNTGKITVLADIKDFFWLDFDSETKTINGYNNKEQIEIAISE
SRS019607_WUGC_scaffold_13832	SRS019607_WUGC_scaffold_13832__gene_16777	F051212	MKKFFFIFVLYWLYSCNGTEKAMATSPDTQKTSISEKQNAEKIERIIYSETGGDTDGKNVHLVITKDSIIYRLTEGVTDERTIADLSLNNNNKDWEAFIDKIDLEDFEKGKPSEELIMDLPTIKIIIKTDKKEYSKTDIQANKTWDYITKQIIDIKYSQLYNHLNLEK
SRS019607_WUGC_scaffold_16586	SRS019607_WUGC_scaffold_16586__gene_20107	F105378	MNVKVYVDKIKKWVQISSDEVLDVNKNLSDLKDKEAAITNLGLYEKFISKEALESGFLPDVFTPDNIITDSTHQFVTDEEKNKWNNKLNAPVPMQDHLANNQIGYDSVNSKFYIGLNNQNVLLGGSSCFDNIIVVNGFFSGNSQPTVIRNNKFNEAGQLITPVFVDVQCVEYTAGDLGEVSVSYTADAISIYNTGSFTGSFQCLIVYPLGSVNE
SRS019607_WUGC_scaffold_17433	SRS019607_WUGC_scaffold_17433__gene_21085	F032313	MACDNNTPQEKPHEQEKHEVPVPVSKPQFDEVGERIWYGRTPAMRLDSTDYGAGLTSVFGMLTSKISKQRFDSLFKQTVWEIKDIRVVETDLSLAKKNPGIMGWITTTEFTCRNGVIVLHRQGIDVNHVDTVNYVYDEVGNEIVLEGTGIRWFVLRLNKNAVEFLQRGRTMWGPYDWYYGRNSGRSEVTLEAK
SRS019607_WUGC_scaffold_27724	SRS019607_WUGC_scaffold_27724__gene_33560	F105380	MSILQLDASQYVKQGRIFKKFDSNLLDSYMDGRQNNYNINLAELDDQISDGIVYADRNGKMIYKFGAKKIIQTAITNGLEISGLSKDLEMKHYSFWVPDLYFVSFYSFNPNEDLYIAYRSKDEEFICLTNIWPDGSSYAEDYFPNGDRLTLKRLCKGSMMSDVSSSDYDAWRNNAVTRASQFVNKFVSARGNSDLDFVGSALRSKVPSHNIKKCAVFLGTITKEQENVNTYEEFMEWTKNTKWFK
SRS019607_WUGC_scaffold_30703	SRS019607_WUGC_scaffold_30703__gene_37450	F033081	MAWLFRRAMPQDTRPTFVWSRLVTEIENAGYFSRRKSSILAVGLIIMTIAMIKMLLFVPGLNQSVVSLLTRGLETFLPTGWATATAWIVGATGVFLMGNFTSYTKKQKSLQSLKATGCGMYNTLLLFALLEEQAFRSGSERWNWRERVRASVCFGLLHVTNIWYSFAAGIALSVTGFGFLMVYLWYYRKYRSQIIATAAAATVHALYNVIALSLIAVVLAIDIAKLL
SRS019607_WUGC_scaffold_57356	SRS019607_WUGC_scaffold_57356__gene_80981	F073671	MNKEQAEHELAELHEKERSLEKALELVREKIRELVNYTDKNKVYK
SRS019607_WUGC_scaffold_57356	SRS019607_WUGC_scaffold_57356__gene_80987	F067846	MSIIAEWERKTFNDYDKQCSKEDDYNRAVEMEIEAIKEDIANGDDDAICAFSEKMLDYDFLKAVILGTDYEEMRIKILTAMAEDRLEQLEKDYRNGYILND