7000000393: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 765337473

Overview

Basic Information

• IMG/M Taxon OID: 7000000393
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052938 | Ga0031285
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 765337473
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 117961358
• Sequencing Scaffolds: 16
• Novel Protein Genes: 16
• Associated Families: 15

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga → Capnocytophaga sputigena	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	4
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Minimicrobia → Candidatus Minimicrobia vallesae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria	1
Not Available	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032313	Metagenome	180	N
F033081	Metagenome	178	Y
F043235	Metagenome	156	N
F047508	Metagenome	149	N
F051213	Metagenome	144	N
F053092	Metagenome	141	N
F061926	Metagenome	131	N
F064819	Metagenome	128	N
F068942	Metagenome	124	N
F076191	Metagenome	118	N
F084342	Metagenome	112	N
F089055	Metagenome	109	Y
F095633	Metagenome	105	N
F097490	Metagenome	104	N
F103431	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2809315	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum	7606
C2809317	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga → Capnocytophaga sputigena	7607
C2810049	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	10074
SRS019327_WUGC_scaffold_25808	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Minimicrobia → Candidatus Minimicrobia vallesae	937
SRS019327_WUGC_scaffold_27552	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	17295
SRS019327_WUGC_scaffold_36395	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1743
SRS019327_WUGC_scaffold_36451	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	969
SRS019327_WUGC_scaffold_39896	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1684
SRS019327_WUGC_scaffold_4409	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1001
SRS019327_WUGC_scaffold_48256	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria	46587
SRS019327_WUGC_scaffold_57371	Not Available	1580
SRS019327_WUGC_scaffold_58348	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1671
SRS019327_WUGC_scaffold_61771	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis	5850
SRS019327_WUGC_scaffold_64093	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1026
SRS019327_WUGC_scaffold_67490	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	3307
SRS019327_WUGC_scaffold_71760	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	10320

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2809315	C2809315__gene_199514	F097490	MFLKTQKMNKKMNVFCKIILPLLCIISCSERKEIEVYNMKIDENKKEVLVEIRNNTENNYYLLSPFVDAMADHGLNHVTSEMIEGQMHYKKLDSIVCSVCIWDDICKEEYYAMRDIVLLPKKSVKTIKYKYNNEKEYKIDEFYTVFPYNGYYNEIGKKMQFMLKKKLDSSNIIKGYEFYNKDIETMTIKM
C2809317	C2809317__gene_199528	F061926	MIKTAKHIKTFLASVLLLIFVMNVSGLFVRLHHQETHQKTEKIAECSDKVCYHKAHLQTKSDCDCGFLCILNYFYILPEKPQIEIHVNEYFSYFSSYKIFVSERIILLWQSRAPPVLS
C2810049	C2810049__gene_199941	F076191	MKIIAENPAEEALLWRIKALSDELVNQDNRSTDMPMWTILDNNKAGKDYGAVTYFTGKAAERHIEENDHHYDNPTIYIRSAHDNRELKDVIHLLILAGGNEIPSNHYGVLRDA
SRS019327_WUGC_scaffold_25808	SRS019327_WUGC_scaffold_25808__gene_37327	F095633	MRNYENSTEVGCREGLTEGELRTMGTLAMEATEELKKTTISKEAVLLGGVPFNSWDEFAKAVQEMAAHSYEPIPVKINTKRLIATAFLDDRGEMSVEENSVPEEVFIDLSRTRCVVNMDRSHKSYKFTCPVLKKYPSGELYPIREAYVISAIDVNGSQEVDFKVI
SRS019327_WUGC_scaffold_27552	SRS019327_WUGC_scaffold_27552__gene_39900	F047508	MLGHRLVEGRVKYPYLRRIWEYLRHSFDTEDVGWVVKRSKLCALMEHIYYLWGDTYALSKALCTVYEAVTDGVDLIEGLYEVLFFENVEDNLYAACVVRNVKVALDLLSFGIAEGDEGVVDPYALFVPRGQDLVVGELDEGELQGGAATVEDQDFHKVLYYMVRCELIPSSP
SRS019327_WUGC_scaffold_36395	SRS019327_WUGC_scaffold_36395__gene_54459	F043235	MDEVVPSDEGHLLIDLCDDDPRSLCGGLGIVTRYPEGAIALFIGLAHRDQCDIDRIDTIPKEVWEFMEVTREIVNTLIQISGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHMEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRSMANNVLLPGSAH
SRS019327_WUGC_scaffold_36451	SRS019327_WUGC_scaffold_36451__gene_54550	F033081	MAWLFGRAMPQDTRPTFVWPRLVTEIENAGYFSRRKFSILAVGLIIMTIATIKMLLFVPGLNQSAVSLLTRGLETFLPTRWATATAWTVGMAGVFLMGDLTNYTPSQKILHKIKATRYEVYNTILFLALLEEQAFRSGSERWNWRERVRASVCFGLLHIMNIWYNFATGIALSVTGFGFLLVYLWYYRKYRIQIIATAAAATVHALYNAIALSLIAVVLAIDIAKLL
SRS019327_WUGC_scaffold_39896	SRS019327_WUGC_scaffold_39896__gene_60007	F084342	LRGYLAIPIRRPFFAQALKETLGQERSLGDAYDKDYQNEKALQWVHRRHILGICKEE
SRS019327_WUGC_scaffold_4409	SRS019327_WUGC_scaffold_4409__gene_5553	F089055	KTPEIEARKKEVRKKLDTIFSDAERRDNSKVNPELGKTAFDVANIPNNEAVDLCNQALGGYGKSLDHINNGPLEIVQTIGISLQRLREYKTEGSCR
SRS019327_WUGC_scaffold_48256	SRS019327_WUGC_scaffold_48256__gene_73749	F103431	MIDFDALIVGMLFFIQLFLQGIAWRVAIAHFLHAERGNAAAAAFDGAFGENIADCHAEDDNDKNAESKEEGFHVCIPEG
SRS019327_WUGC_scaffold_57371	SRS019327_WUGC_scaffold_57371__gene_88857	F032313	EQEKHEVPVPKSKPQFDEVGERIWYGQTPAMRLDSTDYGVGLTPVLGMRTSRISKERFDSLFKQTVWEIKDIRAVETDFSLAKKNPIIFGHSITKEFTCRNGVILLHKQGVGVNHVDTVNYVYDDNEIVLEGTGTRWYVLRLNKNAVEFLQRGRTMWGPFDWYYGRNSGRSEVTLEEK
SRS019327_WUGC_scaffold_58348	SRS019327_WUGC_scaffold_58348__gene_90498	F051213	MALTFVFTSCDPFSKNEPIVEGDVDKYFDSNAQRKSFRVLTAEGKPYNHKVDWHIVGIMVPYSDTYLTKKVDTLSNGDLKISHDWVSFTVRENKSIIDVEVQKNETGKERSVTFRPSNSYKQAYLPKIRVIQRAN
SRS019327_WUGC_scaffold_61771	SRS019327_WUGC_scaffold_61771__gene_96851	F053092	MQSDQGLILCLTHALLVLGALILEPAEMEDPMDDHTVQLFGILIAKELGIATHRIKADEHVPRDHIPLTLVEGDDIGIVVMIEKVLIGLQDALITTELVAELADTTVIAGSDLTDPVAKDTLSEARLLDVFVSIVSYKLRFFRHK
SRS019327_WUGC_scaffold_64093	SRS019327_WUGC_scaffold_64093__gene_101263	F033081	MAWLFNRVMPTDSRPVFVWPKLVAAIEDTGNFGKRWLTAIATGLIIVTIATIKALLMIPGLDSSVVGLLTSIFETFLPARWATGAAWIVGTTGVFLMGNFTSYTKKQKSLQSLKATGCGMYNTLLLFALLEEQAFRSGSERWNWRERVRASVCFGLLHVTNIWYSFAAGIALSVTGFGFLMVYLWYYRKYRSQIIATAAAATVHALYNAIAISLIAVVVAVYLAIDIAKLL
SRS019327_WUGC_scaffold_67490	SRS019327_WUGC_scaffold_67490__gene_108741	F068942	MIRKILSLPTLAFCFTLGSAFFAGCNEDYIKDTKVRWSNVKNPEYGDPINITLKAEGETFTTMGDYPWISFRSDVSTLDTFTSHSFSEADKDTAYYKDIVIYLTRNKRERTTTLKLVAPPNRTQQPKQFDFSIGVTPLGTYIFKVRQPALPAKAQ
SRS019327_WUGC_scaffold_71760	SRS019327_WUGC_scaffold_71760__gene_122815	F064819	MILKDNQGKDRIKFLDIVRLNKEEPVFVKMKVRISTETMVSEEDLDIERSDLEDLTRELKDLCECKIRKFFFQNIDETIEIVFSINDIGTIAVEGKMYDESYMNSINFSFQTDLNGIATFSKEISQKLKKI