7000000369: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 764811490

Overview

Basic Information

• IMG/M Taxon OID: 7000000369
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052913 | Ga0031109
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 764811490
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 58589505
• Sequencing Scaffolds: 17
• Novel Protein Genes: 19
• Associated Families: 15

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
Not Available	1
All Organisms → Viruses → Predicted Viral	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	3
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027205	Metagenome	195	N
F040149	Metagenome	162	N
F043235	Metagenome	156	N
F045567	Metagenome	152	N
F053092	Metagenome	141	N
F055792	Metagenome	138	N
F059076	Metagenome	134	N
F063778	Metagenome	129	Y
F064819	Metagenome	128	N
F074985	Metagenome	119	N
F080165	Metagenome	115	N
F084342	Metagenome	112	N
F092232	Metagenome	107	N
F097525	Metagenome	104	N
F101358	Metagenome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
C2066934	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	695
C2070152	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	738
C2089186	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1316
C2089852	Not Available	1361
C2096270	All Organisms → Viruses → Predicted Viral	2160
C2096488	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	2205
C2100962	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis	5928
SRS047100_WUGC_scaffold_13861	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	543
SRS047100_WUGC_scaffold_14800	All Organisms → Viruses → Predicted Viral	2876
SRS047100_WUGC_scaffold_24347	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	3892
SRS047100_WUGC_scaffold_26774	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	1026
SRS047100_WUGC_scaffold_27619	All Organisms → Viruses → Predicted Viral	2131
SRS047100_WUGC_scaffold_37580	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	2844
SRS047100_WUGC_scaffold_37946	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	987
SRS047100_WUGC_scaffold_40605	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	2512
SRS047100_WUGC_scaffold_41781	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1269
SRS047100_WUGC_scaffold_45919	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis	7716

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2066934	C2066934__gene_96306	F097525	MQQKKIMFKIQNAYQKIIFSIHGHRERKDNFEDWLKVEVKVKDDLEGKYYTRVSECMLFSEVLGLLEWFEQISANQEKPAEIGFIEPELAFEYQNKKLTVLLCYDIAPVSYGEEPYQLTF
C2070152	C2070152__gene_97435	F064819	SMILKDNQGKDRIKFSDIVRLNKEEPVFVKMKVRISTETMISEEDLDIERSDLEDLMRDLKDLCECKIRKFFFQNIDETIEIVFSINDIGTIIVEGKMYDESYMNSINFSFQTDLNGIATFSKEISQEIEKCK
C2089186	C2089186__gene_104286	F043235	VHDAVGEQLRVQAQIFSLSQALKHGIGDCPDTDLKRISIVDEFSTQLTDALLDRPDGSKRELHQGAVNGDDIVQLRHMDEVVPSDEGHLLIDLCDDDPCRLSSGLGIVTRHPEGAIALFIGLAHRDQCDIDRIDTIPKEIWEFMEVTREIVDSLIQVSGAAILVKEVKDGMYMPYHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGETAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLLPGSVH
C2089852	C2089852__gene_104525	F084342	IVSGQCGAKLFLLGGYLAVPIRRPFFAQALKETLGQERGLGDAYDKDYQNEKALQWIHRRHILGICKEE
C2096270	C2096270__gene_107231	F092232	DDYAEIQRLLTGEETPTISIKDSDLKILKVTYYTAIGNQEDTFDVLIAVPRVIDGAYIHLNGNDYFPLFQLVDGSTYNNTSSASAKTQSITLKTNSNAVKMLRNFFEFKLSDGETFKKLASFSVYLFDHKVTLFEYYLARFGWYKTISEFKFDHVIKVTEEDPQDDEYDTFVVQNSHMKTPIYISAVRSVLDADRILQSFVAAFIISINKYATKKFTLDNIYNTDFWICKLGFNFVSSETSVFTKGNAIIESLENSYDIPTQKRLRLPDEIKSNIYSVLKWMASEFSYIRLKDNLDASSKRIRWSEYIAAMYIMIINLKLRRLPEKPDPNVEVLRIKQQLNTPPMALIAELQKSNLKGFRNMVNDRDSFLQLKYTIKGPSGPGEGNGKKVAQNIRAVDISQLGIIDVNTSSASDPGVGGMLCPLNDKVFEYNSFTNEPEPNTWDANFDELLKIYRDQKGYSSAIALAEDAGLELTDDRSPESVAFDTEYLGNLIGKIAPTKAFETQLRPAFINMEDSGSIIFED
C2096488	C2096488__gene_107340	F045567	VHTSTHRVEDALLRVDGDILTPRDGTHIVQTERVVVVLVSQEDRIDMIDTETCGLVVEVRATVDEDTLPALGDDEGRGAQTTVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKEIPSLSSERGCVVERVVR
C2100962	C2100962__gene_109776	F053092	MQSDQGLILCLTHALLVFGALILEPAEMEDPMDDHTVQLFGVLVAKELGIATHRIKADEHVPRDHIPLTLVEGDDIGIVVMIEKVLIGLQDALITTELVAELADTTVIASSDLTDPVAKDTLSEARLLDVFVSIVSYKLRFFRHK
SRS047100_WUGC_scaffold_13861	SRS047100_WUGC_scaffold_13861__gene_12574	F080165	MKSIKILLLLLSLTACNNKTKTISTLELEKTIINYKDLPSKVKERVFYGEAMKLGEEDEERFQDFQETNNPKKYEYYTKQDPQLAWVHYPYIRNKKTKQEYSIDKDGPMGGRYIIYGDSLYISNHYNIYEEDSLSYTFTRYILR
SRS047100_WUGC_scaffold_14800	SRS047100_WUGC_scaffold_14800__gene_13644	F074985	MMELTDGGWYKTPRIIKGKDFLAHIHDTYASGNAMYVEFKASEGEVRILEYQQLYEVDTESAVLFTINTYPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRFNLEQFDQIWLDQTFQKLHPVIVNHEGKFWHVMGLKLDVDADGSFWGLYLKRQDSDFMKEIRMPLTQKFIYNPISGSWSLDDPTQEIKDLEEIKQTLRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDPTTGEQKYLLDHIKAMHID
SRS047100_WUGC_scaffold_14800	SRS047100_WUGC_scaffold_14800__gene_13646	F027205	RTHVASRLIVSADDILKAVKDSEEFERKALSEARKRDRAEGKAPRETLYPNPDLKPGREIVLDYIKNPERRRAPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIRK
SRS047100_WUGC_scaffold_24347	SRS047100_WUGC_scaffold_24347__gene_25203	F063778	MPETISEGAQQKLLQQLQNALGLVADADTSAHDVAAITHSAADGHQLTEVMLQQMTAIDAYLKNCQTSINDAIGNIEAIPLDPPPED
SRS047100_WUGC_scaffold_26774	SRS047100_WUGC_scaffold_26774__gene_28265	F101358	MTEKHSASPAAKEETSAPLPPRQPEYLLTQPITTDGAPQERTPYPDAHIIPRRQDVPRYQWNVLRSSGQLDEGWVDVEIITEDGVTLVRMTKLVNRSNIHRLEKCVPLAVLQEQNIDFTNAYLQKAYGVMMEDGRLQPVADTTHTASQSSATEQETEVMPAQGGDTYEHLSGDSARQLVGSVAAKAS
SRS047100_WUGC_scaffold_27619	SRS047100_WUGC_scaffold_27619__gene_29393	F027205	HVASRLIVSADDIMRAVKESEEFERKALAEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFVVDVSQVRNRDLADEIEKDLFAFMDYLLDEYDIPRRIRK
SRS047100_WUGC_scaffold_37580	SRS047100_WUGC_scaffold_37580__gene_43521	F063778	PETISEGAQQQLLHQLQDALGLVKDADTSTHDVAAITQSAADGHQLTEVMLQQMMAARGYLKSCADQIECAISNIKAIPLDPPPED
SRS047100_WUGC_scaffold_37946	SRS047100_WUGC_scaffold_37946__gene_44086	F101358	MTEKYSASPAAKEETSASLPPRQPEHLLTQPITTDGTPQERATHPDTHIIPKRQDVPRHRWNVLRSSGQLDEGWIDREIIDKDGTVLVRMTKPVHRSNIHQLEKCVPLAVLQEQNIDFTNAYLQRAYGVMVKDGRLQPVADTTHATTSSQEQQTEILPAQGADTHEHLDGDSARRLVGSVAAKASDGEVDNSPLVERVLGRAE
SRS047100_WUGC_scaffold_40605	SRS047100_WUGC_scaffold_40605__gene_48370	F063778	PETISEGAKQKLFQELQDALGLVADADTSAHDVAAITHSAADGHQLTEVMLQQMTAVDAYLDNCQTSINDAISNIEAIPLDPPPED
SRS047100_WUGC_scaffold_41781	SRS047100_WUGC_scaffold_41781__gene_50452	F059076	MTNKILLLGLLLGGVSINAQNINETNAAGKTKQKVGINTTIPTRTLTIKNSTPNDGKPLLRLVDSPVYSKNVGSAMDADLGGNTATSTNYLDYRPLMVDAVGDVYKGLPINNMSILTLTISNVKGDWISNFDTGINYNKYAVAIMSATFKMPSPASGGIVMLRGGSNTPSVDHGGNKYGVTTAPATVLLQQHGANWAIYADYPNIGSYEFTSGSTAIGNLVNGTWVITL
SRS047100_WUGC_scaffold_45919	SRS047100_WUGC_scaffold_45919__gene_59462	F040149	VADEGAKEFRWKVLIKEQGIPVLFIEVVAWYDGRVSSSEILSSFGIALEREPRLSPVWHHDSEDAIHDFIYDISVPKGHALTAVRERETVVMQLLNIHRMF
SRS047100_WUGC_scaffold_45919	SRS047100_WUGC_scaffold_45919__gene_59463	F055792	MEIASQALDSTSAVTHRILLLTTQLGESLLASFGAEDGVIAEAMVTRALESNLSIDSTLEEVGPVLIDKGDDGTEAGTTWGRYTLKTLQKEGYILFEGSMLPCEARRVDSRSPIKSLDLEPRIIGKTMKPIALPHVARLDEGIPLQRIGSLRDLLVTPDVSQADDLQTSREEGTDLLQLMGIIARKYQLFHTFVIISSASLRA