7000000364: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 706846339

Overview

Basic Information

• IMG/M Taxon OID: 7000000364
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052908 | Ga0031102
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 706846339
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 107414667
• Sequencing Scaffolds: 16
• Novel Protein Genes: 17
• Associated Families: 15

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1
Not Available	5
All Organisms → Viruses	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022002	Metagenome	216	Y
F033081	Metagenome	178	Y
F043991	Metagenome	155	N
F045567	Metagenome	152	N
F049707	Metagenome	146	N
F051212	Metagenome	144	N
F055792	Metagenome	138	N
F064818	Metagenome	128	N
F070224	Metagenome	123	N
F077403	Metagenome	117	N
F077405	Metagenome	117	N
F085821	Metagenome	111	N
F095631	Metagenome	105	N
F101358	Metagenome	102	Y
F105377	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
C4064432	All Organisms → cellular organisms → Bacteria	1017
C4079058	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1457
SRS051941_LANL_scaffold_12967	Not Available	525
SRS051941_LANL_scaffold_19603	All Organisms → Viruses	17968
SRS051941_LANL_scaffold_37079	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	5873
SRS051941_LANL_scaffold_37572	Not Available	926
SRS051941_LANL_scaffold_51183	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	602
SRS051941_LANL_scaffold_57376	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	3102
SRS051941_LANL_scaffold_66019	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	892
SRS051941_LANL_scaffold_6640	Not Available	807
SRS051941_LANL_scaffold_66516	All Organisms → Viruses → Predicted Viral	1824
SRS051941_LANL_scaffold_66964	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	36306
SRS051941_LANL_scaffold_71930	Not Available	2136
SRS051941_LANL_scaffold_76439	Not Available	852
SRS051941_LANL_scaffold_76656	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis	7590
SRS051941_LANL_scaffold_77452	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis	6363

Sequences

Scaffold ID	Protein ID	Family	Sequence
C4064432	C4064432__gene_197515	F085821	MNDVFERLAPLAQTKKQQTAVAKFIEKGFKFTRQPDAQKFTFLVYDFFVAGNMPAVQLCIDYLVAQGYPTAENEKKFLNWVFMEPVYYLKYFISDASTQKKLHHDLLNLWYESSKRQLLEQDKGKHDEAYINAWNEANVNKTLSIIRSGETIASCKEDVAKHSRTLNDEYEQNVNLLDEYCRALLYTAETTESQQELVAETQSHI
C4079058	C4079058__gene_204132	F064818	MDKDEFLKKLIAFIADNSSELHPKVFKNKIRFGINKSSYTEMRFDYSQNYKGFYLQLASYNREVGDFFEQEMGNAFLKMLEDESKEFRNLFFVQNSFQLSHYYYGFPIMTNDNTGHLYPEMGTTIFNDVLRNLQANHFKFIQAAEVLSPDLLHYIKRFPSCFFNTALVALLIIEKNLLSLDDERVQGLFEYDNIVTKNECKLFSPFDLIFGKKDY
C4083721	C4083721__gene_206429	F043991	MGKKKPSAVDGFDLNGNVIEEANEFDGVLIEEWVNQRSPLKPSWVGRYSDQMHFDLKDGTEVSFYKRPDIVYGDILFAEGIRTILFKCRQKKNLTRFISRVLKLADMGPSSVHPDLRA
SRS051941_LANL_scaffold_12967	SRS051941_LANL_scaffold_12967__gene_11787	F070224	YLLASPLRPVKTRGSKLRTRDWVKVDYSDQNNIIIMGFGDSLVIENFFAYYAAEFPKMQEYKLYYKGTGEEITKEDFDSIKFTRMPTALRELKKYKLPRTKRFSGEVDRWQHPHLFVIEHDKKAGHYYKYRIALVIYMDYNHPEACIIH
SRS051941_LANL_scaffold_19603	SRS051941_LANL_scaffold_19603__gene_18297	F105377	MEARTAVRDFDKLPLLTPEEAFERAREMGWNRPLFDLDYRVRGLGDWKALETLFRQYDVEDAVIASFGLKSFEEILGVIAMLHERGWHIWQTSAKVYVGGELRTVRAIRAHYPGD
SRS051941_LANL_scaffold_37079	SRS051941_LANL_scaffold_37079__gene_36826	F049707	VVSEYRSPHNDGHDPYILIWEYGTDIQKAEFTERWVEVDENGRVIWYFRLDDGRVMTFPSRDWDQKDDVNHLTTIWMQPKMNGERN
SRS051941_LANL_scaffold_37572	SRS051941_LANL_scaffold_37572__gene_37375	F022002	MSRRLALTLGLLLALLLSLPSHAQDGRSKVPINRTISGFTLGVTTPAEARAIIQRQGGKIILEVGVQAGSKDASYIVSGLNYARRPTQTVAMFFYKGHLHSIDFIFDGWDVLEQIESELEDKYGKMIESEGMFKKKVIVDAFTSLEVVRTFEYEGHVRINHAYIAYTDEELERARSAEKESEN
SRS051941_LANL_scaffold_51183	SRS051941_LANL_scaffold_51183__gene_53604	F051212	INYFYEKVFFIFVLYWLHSCNGTEKAMATSPDTQKTSISEKQNAEKIERIIYSQTGGDTGGKNVHLVITKDSIIYHLTEGVTDEKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSKELIMDLPTTKIIIKTDKKEYSKTNIQANKTWDYITKQIIDIKFSQLNNHLNLEK
SRS051941_LANL_scaffold_57376	SRS051941_LANL_scaffold_57376__gene_61194	F033081	MAWLFRRAMPRDTRPTFVWPKLVATIEDARYLDRRWLTAVAAVLIAMTIAAVKALLLIPGLDSSVVNLLTRGFATFLPRGWATGAAWVAGAVGVFLIGDFTNYTKKQKSLHGLKATRCGVYDTLLLFALLEEQAFRSGSEKWSWRERVRASVCFGLLHITNIWYNFSAGIALSVTGFGFLLVYLWYYRKYRSQIIATAAA
SRS051941_LANL_scaffold_66019	SRS051941_LANL_scaffold_66019__gene_72736	F101358	MTEKYSASHGAENQASPPLPRQPEHLLTQPITTDGTPKERATHPDTHSIPKRQDVPRHQWNVLRSSGQLDEGWIDTEIIDKGGTVLVRMTKLVNRSNIHQLEKCVPLAVLQEQNIDFTNAYLQRAYGMMIKDGRLQPVADTTHATTSSQEQQTEVLPAQSDNTYDHLGGDSARQLVGS
SRS051941_LANL_scaffold_6640	SRS051941_LANL_scaffold_6640__gene_5903	F077405	PRLLVAKQRGVFYGFILLCQIKFVKKFFDWLKIIQKQKVRLK
SRS051941_LANL_scaffold_66516	SRS051941_LANL_scaffold_66516__gene_73458	F077403	NPMDTLRRELDVPYLHVVYQNHTDTAYYLVRQDQSNWIFPRLRYYTVIEAIPRTEELSLTHYVPRWATFMLHARGAELQKRKVLTRQVLLQNQAWEVELEPSILDGKPKPRITYEEGISNWSEQAYYLQGYLYYLMNPQQAHDWYQVSYLPDHAMHSVATEAVVTEGELRPYVHRLAFLPARSRREYVYSLLAFRLIRGRWHFMLPDWEASARLRDEGTSLNVYLLRDQEAPTSPQGYALPDHYEGYQLYQGLVRGDSIWIEM
SRS051941_LANL_scaffold_66964	SRS051941_LANL_scaffold_66964__gene_74145	F095631	MASDAVSANTVARSYSDTVINTVKNDTMLNANIYDINQYIENIKKKYISEDDLTLSMGIFGYLGDVNSNALQNAVSMAAEYSNEAIPIKAKFEKNVISHALSLGINKIYAEPSTMSAMLIFYENELILNTVNDTFRLDREVKIMVGDYEFHIPYDLIIKRILLPTGDYVYTGMYDTTQVNPIITRNSKDVDPYLKPTIKSEIDGQPVIMCLVELRQYEFSTIHKTIVTSNPLESKMMQFEFDNQLAGFDVDVKEYGNPVRKLKPIYNGLNTDGVNDFCNYTFIDSSTIRIMFDNASYLPTANTEVTVNLYTSQGSKGNIKYKDTIYFRVNSSNINYDRLNLLVVPTGEAQYGLDKKSISDLKKLIPKEALARGSVTNSTDINNYFNTIADEDNKIFFFKKMDNPLSRLYYAFLLMDTTTNIIPTNTIPVECIRRDFDNISDSNYILTAGNSIKYDGKTNASVVYNASKDELKKISNESFLYMNPFMCIINKKPLYVSYYLNIMDVSKILEFTYVNQDSKVQFITNNMNWKRSYLTKRDTYVCDISILQNIQSNIGIIHRDDPYDPNKITGADLKVIAVFYSDDKYQVPYRWAEAKFVNYDESSYSFDYRFELNTDNKIDKNVRLKVNDVHEMKAAADKFEPGYMLNNMPMKIFVYCKNVFEYDAGRNKTEQYFADGFLNGYSLTNEYTVKYGIDFLYNYSDLIESVIKIKKQDNGQISYYIDRVPVIGYDYVNTEDKIQSFINELEKKRIHILDCLEVLEDSFGIDIKFFNTYGPSKIFYIENSVPINRVNLSLKFKIKLLTASDKYIIDYIKNDIRKYIEDKSKITDVHIPNIITYITQKYADSITYFEFLDFNGYGPGYQHIYRKDESIVGKIPEFLNINSTNTEDNKLDISIIIA
SRS051941_LANL_scaffold_71930	SRS051941_LANL_scaffold_71930__gene_82114	F077403	MNTIMLLLRRLVLIILLLPSMCTVYAEDRISVHFEVRWHREHNPMDTLRRELDVPYLHIVYQNHTDTAYYLVRQDQSNWIFPRLRYYTVIEDGSRPEKYNLTYYVPRWATYPLKGAGRSVRERRHYTHHVLLRDQAWEVELEPSIVDGQPKPRIAYGEGMDNWSECAYYLQGYLYYLMTPQLDHDWYQVTYLSEHMEYSVGMEMVGTEGTLKPFVHRLAFVPAHSRREYVYSLLAFAVIHGRWQFLLPDWEASGRLRDECIPLNVYQLRGKGSTASTPSGYPLPEHYEGYQLYRGWVRGDSISIKM
SRS051941_LANL_scaffold_76439	SRS051941_LANL_scaffold_76439__gene_90864	F022002	YAQDGQSKEPINRTISGFTLGVTTPAEARAIIQRQGGEIEETQAWSDEVVYAITGLKYARRPTLSVRLYFYKGHLRSISFVFGDLKIFEQIESELENKYGTMAEGKATSKMRVKGIADAFTSLEVVVHSFEYDGHVGFAYAYISYTDLELDRAYSAENENEI
SRS051941_LANL_scaffold_76656	SRS051941_LANL_scaffold_76656__gene_91417	F055792	MEIASQALDSTSAVTHRILLLTTQLGESLLASFGAEDGVIAEAMVTRALKRDLAIDSTLEEVGPVLIDKGDDGTEAGTTWGRYTLKTLQKEGYILFEGSMLPCEARRVDSRSSVKSLDLEPRIIGKTMKPIALPHVARLDEGIPLQRIGGLRDLLVTPDVSQANDLQTSREEGTDLLQLMGIIARKYQLFHTFVIISSASLRA
SRS051941_LANL_scaffold_77452	SRS051941_LANL_scaffold_77452__gene_94160	F045567	VRQRDGRDTLTEELEGGITPLLYRTEGEARRPWVGMVTEDVVHTSTHRVEDALLPVDGDILTPRDGTHIVQTERVVVVLVSQEDSIDTIDTETCGLVVEVRATVDEDTLPTLGDDEGRGAQTTVTGIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKEKPRLTEREGAW