7000000349: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 763759525

Overview

Basic Information

• IMG/M Taxon OID: 7000000349
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052887 | Ga0031326
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 763759525
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 99540128
• Sequencing Scaffolds: 13
• Novel Protein Genes: 14
• Associated Families: 14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas bobii	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	5
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	1
Not Available	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	2
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides thetaiotaomicron	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033081	Metagenome	178	Y
F043235	Metagenome	156	N
F051211	Metagenome	144	N
F053092	Metagenome	141	N
F054110	Metagenome	140	N
F066860	Metagenome	126	N
F072446	Metagenome	121	N
F077404	Metagenome	117	N
F080166	Metagenome	115	N
F090517	Metagenome	108	N
F095630	Metagenome	105	N
F095633	Metagenome	105	N
F103435	Metagenome	101	N
F105378	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C3249457	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas bobii	555
C3276921	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	705
C3279681	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	727
C3284987	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	775
C3299119	Not Available	948
C3301497	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	986
C3306237	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1076
C3311635	All Organisms → Viruses → Predicted Viral	1210
C3313472	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides thetaiotaomicron	1266
C3318994	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1485
C3325335	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1916
C3328334	All Organisms → Viruses → Predicted Viral	2238
SRS047210_WUGC_scaffold_42348	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	901

Sequences

Scaffold ID	Protein ID	Family	Sequence
C3249457	C3249457__gene_131317	F090517	LGLLFLASSCKNKKDTPRLEFSSVELRQTVWNGTLEYKNAKRGSYSVYLNFLSDSEVEVSAYDSKDPTASYIVQADCFYTITDRIFTLKTQGDRELHPSMDQNAWYLIRKEPSLLVFQANAGNPDREATLTLRK
C3276921	C3276921__gene_142211	F095633	MRNYENFTEIGRGEGLTEGELRTMGALAMKATEELKKTTIRKEAVLLGSVPFGSWDEFAKAAQEMAAHSYEPIPVKINTKRLIATASLDDGGEMSVEERSVPEEVFIDLSRTRCVVDADRSHKSYKFTCPVLEKFPDGELYPIREVYVISAIDVNGSQEVDFKIIYGNLN
C3279681	C3279681__gene_143331	F080166	YLTFKLEVTFNNIIKRINTEIKENFHSEYVVGANKLTTNLRYKYQMRLSPRGEKIGIVIDWDNYDDLCTIIEESINICDPENKMSPFKRLYSTTGDLLDIKCDSLKVRYLHLEDRWNNKVDLIPFVLVDDNRGTLTEAMRFRFNNDLTFDVPVSRLKGFRRFLMTYNPVLHAGAMARYMAITPLLGSNRQNMLK
C3284987	C3284987__gene_145535	F095630	YVMKALQGRGFFISSDIILTAKTYGDTCFMDVEFYSPEAQDAYNEALRLFDKWDIPRSAALRAATECGIEMNRLVAELAQDELLHELSAVQSSPWRQQSDMTYRKADSKSSVNTLFHAPYIKYGLESKNLFPEYVLEYSVDEKYIQSPVDQALAAVVMQAVALNFLVMIREKHTVYDRGDQWSEASKSVGYRMFLGLIKKDDSIVHQLKCEFMEYVQFLSASSFCNNLQAALVRCSHNYEQVLLGRDTLNSILGGCVI
C3299119	C3299119__gene_151941	F072446	IPPMKKLLFLLSGLCLYCLAACDNDHEPTKPVRPFHGDTLAQIAWNFRFIVENHYHSIPGIVPEGTTYRVPVIPRSVEDRTEKEYNDMELGKEAHLVFRATVHGDTINRHKKELKALSLQLNRLTETSIGTSPVLCGVKSIEAVGIAENGNTYDLRGEMKLRIRDYSYRLKYPSGIITLDCENTESLTAKYVVPLGRIREYELAEHIQPELKFYLPVKRCMDFSSIRFAITLFNGEVLSFQHKLPSKSVLQELPNKSVLENYQQYGFIPESTYFTTLWPLPDYKYNEREL
C3301497	C3301497__gene_153053	F043235	VDEFGTQLTDALLDRPDRSKRELHQWAVNGDDIVQLRHMDEVIPSDEGHLLIDLCDDDPRSLCGGLGIVTRYPEGAIALFIGLAHRDQCDIDRIDTIPKEVWEFMEVTREIVDTLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGETAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLLPGSAH
C3306237	C3306237__gene_155490	F053092	MQSDQGLILCLTHALLVLRTLILEPAEMEDTMDDHTVQLFGVLVAKELGITTHRIKADEHVPRDHIPLTLVEGDDIGIVVMIEEVLIGLQDALITTELIAELADTAVIAGSDLTDPVAKDTLSEARLLDVFVSIVSYKLRFFRHK
C3308433	C3308433__gene_156562	F103435	VINMKFVFTTEPIYQYYRAYLYPSDKDKLDKDLMVEYGDYKDYWDLKQQQDALPENIFVSELTSRDYPRNPWNYVSQLISKLTYSYLIDNPEFENIFSEILFNQSEEEFYEFYKAIDRFYNGSEIFIIVNNDEYSDMVTQMMCNVIRRMYGIHPQVIYDMDDILNIRDDIDFSPQGAQLAYLQRSAYYKLEAKRSLEPLQIWYPFDMNTYTNALE
C3311635	C3311635__gene_158216	F054110	VLDVNYQPTIKKLLKALQMNGRRYVVDVRQSWSKYDKPCKVYIVNRMYAEEEYKLTFPHKYKKGKTFKQGQLYKKESEYSSTKQHEVLLFLVRTYKGGD
C3313472	C3313472__gene_159170	F077404	MAQQIIMTHKLAAAALSLKEPTQIGNTQNPFAMNTLKTIFTCFFTLCFMMVANSYAQKTDSINTEAGKSVLHRNAIYIPPALEQYADTALLHQRFNVENKGNYLYTPFTEDNEPTIPFNYGFLHPLGERFYNCFMGKVDRILRPKADKGFIILTSYLVVLGDSYVFDTSNKDTSKLADLKYLDFRHIKRDFSYGHPYQGFTPNDRIELSNFVQSYGRQAALETANAWVMASYPFSLQSTKFENRYTRGRKLILTDGHSTLYLYFLMIDSVAPNFDTEVLPYIKGVFRFNRFR
C3318994	C3318994__gene_162241	F066860	MTTKKQKLQKQQAIDTWIVIALWVSAIWFSLARGFITGIGGWVLALLGPWALIVSCICLAIISRQIKKRHVSKDHLTTIVRASFIVMSISLFICGLAMPDFSDTETFSTLSVYTNNAISFETSKTIAIISGFVVVLSLFVAVTFGIAEDRE
C3325335	C3325335__gene_166342	F051211	MRAKKAIKVFEKIRDLPYGTSGSDEVWSCYQKCVLLKQELQHIGITSQLLIGVFDWQDLQIPEHILKIRRQQYERHVILRVFIDEFAYDVDPSIDIGLTPMLPMACWDGKSSTTTMVPLRRLRVYRPHSLHERILSQLRRKIFRSNPESFYTAIDIWLATIRVS
C3328334	C3328334__gene_168529	F105378	MNIKVYVDKIKKWVQISSDEVLDVNKNLSDLKDKEAAITNLGLYEKFISKEALESGFLPDVFTPDNIVIDSTHQFVTDEEKSKWNNKLNAPVPMQDHLENNQIGYDSTNSKFYIGLNNQNVLLGGSSCFDNIIVVNGFFSGNSQPTVIRNNKFNEAGQLITPVFVDVQCVEYTAGDLGEVSVSYTADSINIYNTGSFTGSFQCLIVYPLGSVNE
SRS047210_WUGC_scaffold_42348	SRS047210_WUGC_scaffold_42348__gene_46284	F033081	DTRPIFVWPKLVVAIEGYFHRRWLVAIAVLLIAVTIVIAKALLLVPGLDNSVVGLLTSIFETFLPARWATGAAWVAGMTGVFLIGDFTDYTPSQKSLHSLRATKWGVYNALLLFALWEEQAFRSGSEKWSWRERVRASVCFGAIHVVNIWYSFAAGIALSVTGFGFLLVYLWYYRKYRNQIVATGAAATVHTLYNVIVLSLTVAAAAVYLAIDIAKMM