7000000336: Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 764083206

Overview

Basic Information

• IMG/M Taxon OID: 7000000336
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052874 | Ga0027969
• Sample Name: Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 764083206
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 46994288
• Sequencing Scaffolds: 13
• Novel Protein Genes: 13
• Associated Families: 13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Apibacter → Apibacter adventoris	1
All Organisms → cellular organisms → Bacteria	1
Not Available	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030786	Metagenome	184	N
F042387	Metagenome	158	N
F043235	Metagenome	156	N
F047508	Metagenome	149	N
F051213	Metagenome	144	N
F053092	Metagenome	141	N
F054109	Metagenome	140	N
F085821	Metagenome	111	N
F089056	Metagenome	109	N
F090517	Metagenome	108	N
F092231	Metagenome	107	Y
F097525	Metagenome	104	N
F101359	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2477376	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia	547
C2485429	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	603
C2494142	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	687
C2498048	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	737
C2503808	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	839
C2505706	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Apibacter → Apibacter adventoris	882
C2508865	All Organisms → cellular organisms → Bacteria	964
C2512166	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1086
C2524198	Not Available	8901
SRS019073_WUGC_scaffold_10917	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	2347
SRS019073_WUGC_scaffold_14308	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	884
SRS019073_WUGC_scaffold_16473	Not Available	708
SRS019073_WUGC_scaffold_5549	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	765

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2477376	C2477376__gene_64046	F092231	ERNAMIIFAPQEFITWANMLVQFPWPIQLNDFSAYAEQLGWKPTSLPDEFTVFPDNDYEFTTLSSSETGDVYKLFFYMAVNDLKNDEGAAELNDHLVSCVAAGRKEWGEPFLLEAGDDPTATWRFPGDMFAQVTGGSTAVLFRFFTPEGRWYFL
C2485429	C2485429__gene_68556	F051213	MKASKLLWAVVMALTFVLISCDRVTDEPTIEGEMKKLFDSQAQRKSFRILTGSGKPYNHKVDWHIIGITDPYSDTYLTKKVDTLSNGDLKISYDWVSFTVRENKSVIDVEVQENETGKVRAVYLNTNTSGRHITLPDMRVTQRAK
C2494142	C2494142__gene_73633	F097525	MQQKKIMFKIQNAYQKIIFSIHGHRERKDNFEDWLKVEVKVKDDLEGKYYTRVSECMLFSEVLGLLEWFEQISVDKEKSTEIGFIEPELAFEYQNKKLIVLLCYDIAPVSYGEEPYELTFSLDDKTLAMIIKELGEAVASFKKA
C2498048	C2498048__gene_75964	F042387	MAGFFLVSCSRENDKMTDETLANSAKMQLPTKVTIAENKKVISKRFEYQNDNELKEIIDEGSGERIVFVYEKDFITSKIRYSQAGEELGKANYQYNNGKLSSVIDEVVISDSGIQYKRVVTREYHYNGSEVSVNENIKYHSESYAYNLRDENFTHTYVLNGENITKIHHEISKNVPGGYFYLNPNNMVVVDEEVTYDAKNSPYKNIKGFSVLAVEFCGLDEDENTIADYLNFRWVSHNPTLI
C2503808	C2503808__gene_79585	F101359	MKKFLSKRSILVGALALVLGFIVSSCSRDKDDDAIYTAKLQVQHQSSNSRNSAVNGSVTYRDANGNKRKIYLRSGMSESISFEVNKGFKSFVEVKATDIYGNLFVKWTVTKTYTGARVQNWSTSFTSYTGQGITDSYKETVK
C2505706	C2505706__gene_80814	F089056	VFLKTQKMNKKMNVFCKIILLLLCIISCSKRKEADNTMVLEKNHTFFLWNNDSLGCKHERTIEMGEELYNTFKKSNKNDSILLKEYLGTPTRRFKDKEVIIFMYYINSCCDNGQLLEECDVSFISITFTNKNKIL
C2508865	C2508865__gene_82974	F047508	TDAVLVIEFVGEPIHIGMLGHRLVEGRVKYPYLRSIGEYLRHSFDTEDVGWVVKRSKLCALMEHIYYLWGDTYALSKALCTVYEAVTDGVDLIEGLYEVLFFENVEDNLYAACVVRNVKVALNLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELNEGELQGGAATVEDQDFHKVLYYMVRCELILSSP
C2512166	C2512166__gene_85286	F030786	MKRTRIHKVVFQMLVVMIVTSSLQLLLKNGSATKGGNATGAKKANKISFADITDGDKSKVVAIKVKYFDDEGADKIFENNNNRILNTINSQHISYNSQSAEYSKPRLFLLYQSLKVDC
C2524198	C2524198__gene_97114	F054109	MFKEKTYMTGRPKSKKGVKVHTAFKIYPKDKERAQVMADNLDMSLSAYINKAVLEKLAHDEKSEA
SRS019073_WUGC_scaffold_10917	SRS019073_WUGC_scaffold_10917__gene_7521	F053092	MQSDQGLILCLTHALLVLGALILEPAEMEDPMDDHTVQLFGILVAKELGIATHRIEADEHVPRDHIPLTLVEGDDIGIVVMIEKVLIGLQDALITTELVAELADTTVIASSDLTDPVAKDTLSEARLLDVFVCIVSYKLRFFRHK
SRS019073_WUGC_scaffold_14308	SRS019073_WUGC_scaffold_14308__gene_10890	F090517	TPRLQLSSVELRQTVWNGTLEYKNAKRGSYSVYLNFLSDSEVEVSAYDSKDPTASYIVQADCFYTITDRIFTLKTQGDRELHPSMDQNAWYLIRKEPSLLVFQANAGNPDREATLTLRKK
SRS019073_WUGC_scaffold_16473	SRS019073_WUGC_scaffold_16473__gene_14238	F085821	MSNIFELLAPLAETKKQQTTVAKFIEKGFKFTRQPDAQKFTFLVYDFFVAGNMPAVQLCIDYLVAQGYPTAENEKKFLNWVFMEPVYYLKYFISDASTQKKLHHDLLNLWYESSKRQLLEQDKGKHDEAYIDEWVKANVNKTLSIIRSGETIASCKEDVAKHSRTLNDEYEQNVNLLDEYCRALLYTAETTESQQELVAEIQNHIALLKDLYKKVNKIK
SRS019073_WUGC_scaffold_5549	SRS019073_WUGC_scaffold_5549__gene_3463	F043235	LLDRPDRSKRELHQWAVNGDDIVQLRHMDEVVPSDEGHLLIDLCDDDPRSLCSGLGIVTRYPEGAIALFIGLAHRDQCDIDRIDTIPKEVWEFMEVTREIVDTLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRCMASNVLLPGSAH