7000000331: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 159571453

Overview

Basic Information

• IMG/M Taxon OID: 7000000331
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052869 | Ga0031010
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 159571453
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 92807939
• Sequencing Scaffolds: 15
• Novel Protein Genes: 16
• Associated Families: 13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Morganellaceae → Providencia → Providencia rettgeri	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	3
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces → Actinomyces urogenitalis	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F033081	Metagenome	178	Y
F036281	Metagenome	170	N
F046432	Metagenome	151	Y
F049707	Metagenome	146	N
F051211	Metagenome	144	N
F051213	Metagenome	144	N
F051214	Metagenome	144	N
F074985	Metagenome	119	N
F077405	Metagenome	117	N
F092232	Metagenome	107	N
F095631	Metagenome	105	N
F103434	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C4754713	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	604
C4757083	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	614
C4776890	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Morganellaceae → Providencia → Providencia rettgeri	719
C4779780	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	739
C4792776	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	857
C4806061	All Organisms → Viruses → Predicted Viral	1063
C4820308	All Organisms → cellular organisms → Bacteria	1645
C4829399	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces → Actinomyces urogenitalis	7112
C4829799	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	17110
SRS013836_Baylor_scaffold_20004	All Organisms → Viruses → Predicted Viral	2523
SRS013836_Baylor_scaffold_28347	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	819
SRS013836_Baylor_scaffold_28699	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae	1128
SRS013836_Baylor_scaffold_29910	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1011
SRS013836_Baylor_scaffold_30138	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	11568
SRS013836_Baylor_scaffold_5875	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	512

Sequences

Scaffold ID	Protein ID	Family	Sequence
C4754713	C4754713__gene_141151	F051214	MPGKIVSHETFLTIDTEFIDLKQCFEAFRRGVELQDKSGEDILVICNSIDTIEYQLKNGDSFLITYDPVHRVMAMRMFLHEGDQVLKPLYIYNNREYQIACEFLRQIMGNRIEIDEEWLA
C4757083	C4757083__gene_142491	F049707	VVSEYRSPHNDGHDPYILIWEYGSEVQQAEFTERWAEYEPDTGWTVWYFRLDDGRVMKFRALEWEQRDDVNHLTTIYFTPKKEQQ
C4776890	C4776890__gene_153917	F051211	IRDLPYGTSGSDEVWSCYRKCVLLKQELQHIGITSQLLIGVFDWQDLPIPEHTLNLRRQRHERHVILRVFIDGSTYDIDPSIDIGLAPTLPIAHWDGTSNTATMASLKHLHIYQPHSLHERILSQLRSKLFRGNPKEFYIAIDKWLADTRAHHSS
C4779780	C4779780__gene_155580	F046432	MQMTENELSEVISKFQMPEGRYSIEQEGSFGRGEFFWIIKNQSTNQRYLLMNTYSHHGVESELECYREEGFDNLEAIPRRIETLEVVSDAEDEIFKYLFGFYSIFEMKS
C4792776	C4792776__gene_163628	F033081	MAWLFRRAMPRDTRPTFVWPKLVATIEDARYLDRRWLTAVAAVLIAMTIAAVKALLLIPGLDSSVVNLLTRGFATFLPRGWATGAAWVAGVAGVLLIGDFTNYTKQQKALHSLKATRCEAYNTLLLFALWEEQAFRSGSERWSWCERVRASVCFGLAHVVNIWYSFAAGTALSMTGFGFLLVYLWYYRKYRSQIIATAAAATVHALYNAIALSLIAVTAAVYLAINIAKML
C4806061	C4806061__gene_172330	F051214	MPGKIVTHDTHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQVMHDKIDLKDEWI
C4820308	C4820308__gene_182968	F051213	MNLYKILGALILALSFVFTSCDWVGNEPTIEGDIDKYFDSNAQRKSFRVVNASGKRYNHKVDWHIVGITQLGLKTYLTEKVDTLSNGDLKISYDWVSFTVKENKSVIEVEVQKNETGQARSVLFATRNDDKQAHLPDMIVTQGAK
C4829399	C4829399__gene_192440	F103434	MVGHRPRRGRFLEDGPHAVEVTVAVIKEGRTGRRYERGETFYVDKVLVQPSAGNALKATENRDIRGDLTDETTLKVMGTGRKWPGGPHSWVKVLRGPASLEGKTFQQAGEPLTYDASPMTRHWAVRCDTLGAAAK
C4829799	C4829799__gene_193186	F092232	MINQAKFIADYNERNRPKFNDKFFQKSDDDIIEDLKDVILSCQRDKFYTIRVEKFEVIDDYAEIQRLLTGEETPTISIKDSDLKILKVTYYTAIGSQEDTFDVLIAVPRVIDGAYIHLNGNDYFPLFQLVDGSTYNNTSSASAKTQSITLKTNSNAVKMLRNFFEFKLSDGEIFKKLASFSVYLFDHKVTLFEYYLARFGWYKTISEFKFDHIIKVTEEDPQDDEYDTFVVQNSHMKTPIYISAVRSVLDADRILQSFVAAFIISINKYATKKFTLDNIYNTDFWICKLGFNFVSSETSVFTKGNAIIESLENSYDIPTQKRLRLPDEIKSNIYSVLKWMASEFSYIRLKDNLDASSKRIRWSEYIAAMYIMIINLKLRRLPEKPDPNVEVLRIKQQLNTPPMALIAELQKSNLKGFRNMVNDRDSFLQLKYTIKGPSGPGEGNGKKVAQNIRAVDISQLGIIDVNTSSASDPGVGGMLCPLNDKVFEYNSFTDEPEPNTWDANFDELLKIYRDQKGYTSAIALAEDAGLELTDDRNPESVAFDTEYLGNLIGKIAPTKAFETQLRPAFINMEDSGSIIFED
SRS013836_Baylor_scaffold_20004	SRS013836_Baylor_scaffold_20004__gene_15426	F036281	VITLIKVDEGPVDIYELRMQYLAKLKETDGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNADGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWTAREGKPAPFFYESRQYHVKSFMRIPGSTDLWITAEREHGHWYTFRMSDDQKSKFTRHTMTNEKGHQTYDWVLKNVEWAADTIRYF
SRS013836_Baylor_scaffold_20004	SRS013836_Baylor_scaffold_20004__gene_15427	F074985	VELTDGGWYKTPRIIKGKDFLAHIHDTYASGNAMYVEFKASEGEVRILEYRRLYDVDTESAVLFTINTFPQESILLKNIEEYEFIQYRPQQAWKAIHMGNTKRINLEQFDQIWLDQTFQKLHPVIVNHDGKFWHVMGLKLDVDADGSFWGLYLKRQDSDFMKEIRMPLTQKFIYNPISGSWSLDDPTQEIKDLEEIKQTLRADAILDVTVSGVPMTLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDPTTGEQKYLLDHIKAMHID
SRS013836_Baylor_scaffold_28347	SRS013836_Baylor_scaffold_28347__gene_26000	F018385	GLHPWSLSLTIGVLGLMAEYVNRWDPYSELSIEKDRDPVLDDHLIYGTNVEHYTLTVYSPEGRVSKYWNARILKDDLGRCRIACPREGKILCFSWFDWDAHMFTHDGMNELVFAPKLNSRSPQSLWNKKEVK
SRS013836_Baylor_scaffold_28699	SRS013836_Baylor_scaffold_28699__gene_26603	F077405	LPTELFPRLLVAKQRGVFYGFILLCQIKFVKKIFDWLKIIQKQKVRLK
SRS013836_Baylor_scaffold_29910	SRS013836_Baylor_scaffold_29910__gene_29420	F033081	MAWLFRRAMPRDTRPTFVWPNLARAIGDARYFDQRWLTAIATVLIIVTIATIKVLLMIPGLDSSVVELLTSIFETFLPARWATGAAWVAGAVGVFLIGDFTNYTKKQKSLHGLKATGCGVYDTLLLFALLEEQAFRSGSEKWSWRERARASVCFGLLHITNIWYSLAAGVALSATGFGFLLVYLWYYRKYRSQVVATAAATTLHTLYNVIALSLIAVAAVAYLVINIAKML
SRS013836_Baylor_scaffold_30138	SRS013836_Baylor_scaffold_30138__gene_30258	F095631	MASDAVSANTVARSYSDTVINTVKNDTMLNANIYDINQYIENIKKKYISEDDLTLSMGIFGYLGDVNSNALQNAVSMAAEYSNEAIPIKAKFEKNVISHALSLGINKIYAEPSTMNAMLIFYENELILNTVNDTFRLDREVKIMVGDYEFHIPYDLIIKRILLPTGDYVYTGMYDTTQVNPIITRNSKDVDPYLKPTIKSEIDGQPVIMCLVELRQYEFSTIHKTIVTSNPLESKMMQFEFDNQLAGFDVDVKEYGNPVRKLKPVYNGLNTDGVNDFCNYTFIDSSTIRIMFDNASYLPTANTEVTVNLYTSQGSKGNIKYKDTIYFRVNSSNINYDRLNLLVVPTGEAQYGLDKKSISDLKKLIPKEALARGSVTNSTDINNYFNTIADEDNKIFFFKKMDNPLSRLYYAFLLMDTTTNIIPTNTIPVECIRRDFDNISDSNYILTAGNSIKYDGKTNASVVYNASKDELKKISNESFLYMNPFMCIINKKPLYVSYYLNIMDVSKILEFTYVNQDSKVQFITNNMNWKRSYLTKRDTYVCDISILQNIQSNIGIIHRDDPYDPNKITGADLKVIAVFYSDDKYQVPYRWAEAKFVNYDESSYSFDYRFELNTDNKIDKNVRLKVNDVHEMKAAADKFEPGYMLNNMPMKIFVYCKNVFEYDAGRNKTEQYFADGFLNGYSLTNEYTVKYGIDFLYNYSDLIESVIKIKKQDNGQISYYIDRVPVIGYDYVNTEEKIQNFINELEKKRIHILDCLEVLEDSFGIDIKFFNTYGPSKIFYIENSVPINRVNLSLKFKIKLLTASDKYIIDYIKNDIRKYIEDKSKITDVHIPNIITYITQKYADSITYFEFLDFNGYGPGYQHIYRKDESIVGKIPEFLNINSTNTDDNKLDISIIIA
SRS013836_Baylor_scaffold_5875	SRS013836_Baylor_scaffold_5875__gene_3356	F018385	GLHPWSLSRISGMETMMADLINSWLPYQELSIEKDRDPVTDDEIIYGSNVKHFTLTVYSPEGRVNKYWNARILKDQVGYCRVACPREKKILCFNWVNWTAYMFSHDGLNELVFMPDARRRTVSQLSFDHVSMKEVK