7000000298: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 159915365

Overview

Basic Information

• IMG/M Taxon OID: 7000000298
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052821 | Ga0031264
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 159915365
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 99628161
• Sequencing Scaffolds: 20
• Novel Protein Genes: 20
• Associated Families: 18

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → Prevotella disiens	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
Not Available	2
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	2
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030786	Metagenome	184	N
F033081	Metagenome	178	Y
F040149	Metagenome	162	N
F045567	Metagenome	152	N
F046433	Metagenome	151	N
F051211	Metagenome	144	N
F053092	Metagenome	141	N
F054109	Metagenome	140	N
F057446	Metagenome	136	N
F061925	Metagenome	131	N
F064819	Metagenome	128	N
F081454	Metagenome	114	N
F081510	Metagenome	114	N
F084342	Metagenome	112	N
F099454	Metagenome	103	N
F103430	Metagenome	101	N
F105376	Metagenome	100	N
F105380	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2446090	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → Prevotella disiens	606
C2446160	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	606
C2446286	All Organisms → cellular organisms → Bacteria → Proteobacteria	607
C2471958	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	828
C2472284	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	833
C2473286	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	847
C2495542	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1448
C2508284	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum	3085
C2513115	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2	6694
C2514935	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	17340
SRS016569_Baylor_scaffold_12661	Not Available	10076
SRS016569_Baylor_scaffold_15287	All Organisms → Viruses → Predicted Viral	1503
SRS016569_Baylor_scaffold_18745	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1020
SRS016569_Baylor_scaffold_29591	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1986
SRS016569_Baylor_scaffold_43846	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	805
SRS016569_Baylor_scaffold_45257	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1054
SRS016569_Baylor_scaffold_5163	All Organisms → cellular organisms → Bacteria	93511
SRS016569_Baylor_scaffold_54892	Not Available	1199
SRS016569_Baylor_scaffold_56193	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	984
SRS016569_Baylor_scaffold_8445	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1946

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2446090	C2446090__gene_131694	F099454	VLRDFSTTRAGVFLQCSQRHLVETERIYLYLVSKRTHKPKTHSGIKTLMKASKLLWAVVMALTFVLTSCDRVTDEPTIEGKMNKFFDSQAQQKSFRVLTASGKPYNHKIDWHIIGILDPKSETYLTKKIDTLSNGDLKISYDWVAFIVRENKSVIDVEVQKNETGQDRSVDFVAQDNHKGLASPSMTVIQRAK
C2446160	C2446160__gene_131715	F099454	VLRDFSTTRAGVFLQCSQRHLVETERIYLYLVSKRTYKPKTHSGIKTLMKASKLLWAVVVALTFVFTSCDWVGDEPTIEGKLDKFFDSQAQRKSFRILTGSGKPYNHKVDWHIIGITDPYSDTYLTKKVDTLSNGDLKISYDWVSFTVRENKSVIDVEIQENETGKVRAVYLNTNTSGRHITLPDMRVTQRAK
C2446286	C2446286__gene_131751	F061925	NNSMSWEYSINLDSEEAVNSVVTDLKICELFSSSTTDYIDWKNSEPIDDIPYDARFYTDKKKTIYIAINSFSKNIFLALKSILAKQNHHLTDCDTDEEVILEHIFRSVI
C2471958	C2471958__gene_140942	F030786	MLVVMIVTGSLQLLLKNGSAAKGGNATGAKKISLADITGGDDSETGVLKVKYFDDEGADKIFENNNNRILNTINSQHISYNSQSAEYSKPQLFLLYQSLKVDC
C2472284	C2472284__gene_141085	F033081	MAWLLRRVMPQDPRPVFVWPRLVAAIGNVGYFSRRGFSVLAVGLIIVTIATIKILLFVPGLNQSVVSLLTRGLETFLPTGWATIAAWVVGTTGVFLIGSFTSSYTPSQRLLYSLEATGCGVYDALLLLALIEEQAFRSGGEKWSWHGRARASVCFGLIHVTNIWYSFAAGIALSATGFGFLLVYLWYYRKYRNQIVATAAAATVHTLYNVIALSLIVVAAAIILVIDIAKMM
C2473286	C2473286__gene_141429	F064819	MILKDNQGKDRIKFSDIVRLNKEEPVFVKMKVRISTETMVSEENLDIERSDLEELTRNLKDLCECKIRKFFFQNIDETIEIVFSINDIGTIAVEGKMYDESYMNSINFSFQTDLNGIATFSKEISQELKKI
C2495542	C2495542__gene_150217	F057446	MNSISFGKTTITSYPEYFEITDNKKTSKLLYLSASLVFIAIYLFDLYQNDFDFGKVAHFKTISAVLWLVIFALQFWLINIESKIEKSKIKEIVVRKNRWASIVIHYGDKKRKIDGFSQDEAEQIIKFLMNNR
C2508284	C2508284__gene_156958	F081454	MKAFKFILLLFITSASLVFGQEKRYFFKHEFQPNSKYLIKYKTDMDGGYKFVGSKEVIDKIGMDGVKMTINSDIESAISTQKKQSNNVPFILEYTKYFYKAEINGETVNRKIPLQGVKLIGDIVNGKKMEVKNVEGNIDENTKKILIESIKQFSAIDTDFPKEGLKIGDSFDVVVPYKQSTQMGDIEMKMNIKYTLLKVEKEEAYFDMLVDFVMGDKNVKNMDLSASGDGKGFLLFDMKNNYFTSQNIDMTINLKLKTELLTLENTSKAKSIITQQKIK
C2513115	C2513115__gene_160596	F105380	MSILELDATQYVKQGRIFKKFDSNLLDSYMDGRQNNYNINLAELDDQISDGIVYADRNGKMIYKFGAKKIIQTAITNGLEISGLSKDLEMKHYSFWVPDLYFVSFYSFNPNEDLYIAYRSKDEEFICLTNIWPDGSSREESYFPNGKRLKLKRLCKGSMMSDVSSSDYDAWRNNAVTRASQFVNKFVSARGNSDLDFVGSALRSKVPSHNIKKCAVFLGKITKEQENVNTYEEFMEWTKNTKWFK
C2514935	C2514935__gene_162968	F081510	MKLPKINTKAIKAGAKTTYNTAKILGKKYAPIALVTTGLVGYGVAVYQGIKSGKKLEATKAKYEAKDAAGEEYTRMDVVKDVTKDVAVPVAIAVASTAAIGLGFAIQTNRLKAVSAALTAVTEEHARYRLQCKEVLDEETFKKIDTPMDQVTVEEDGKEVQSFIPKEGLMYGNWFKYSANYTSDSPEYNEQWIRESIRVLEEKISRKGLLSFADMLDQLGFDVPKAALPFGWTDTDGFYIEYDIMEVWNEDEQLHEPQIYVRWKCPRNLYATTNFRDLIPGRKELA
SRS016569_Baylor_scaffold_12661	SRS016569_Baylor_scaffold_12661__gene_16480	F105376	MNKNKKEGNMEPEVSAKEFGALEADVRHIKEGVDKHTITLERIENIARANVTQAQLKTYIAEHEKESEEKYVKRTEIEGVISFWKLVTSNLAKLFAIALVGLAIYATNNLIQQNKAVTELKEEVQQTQVRRK
SRS016569_Baylor_scaffold_15287	SRS016569_Baylor_scaffold_15287__gene_19797	F053092	FTDQLMQSDQGLILCLTHTLLVLGALILEPAEMEDPMDDHTVQLFGILVAKELGIATHRIKADEHVPRDHIPLTLVEGDDIGIVVMIEKVLIGLQDALITTELVAELADTTVIAGSDLTDPVAKDTLSEARLLDVFVSIVSYKLRFFRHK
SRS016569_Baylor_scaffold_18745	SRS016569_Baylor_scaffold_18745__gene_24266	F084342	VSGQCGAKLFLLGGYLAIPIRCPFFAQALKKTLGQERGLGDAYDKDYQNEKALQWIHRRRILGICKEE
SRS016569_Baylor_scaffold_29591	SRS016569_Baylor_scaffold_29591__gene_38719	F045567	MCQRDGRDTLTEELEGGITPLLYRAEGEARRPWVGMVTEDVVHTSTHRVEDALLPVDGDILTPRDGTHIVQTERVVVVLVSQEDSIDTIDTEACGLVVEVRATVDEDTLPTLGDDEGRGAQTTVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKEKPHLTEREGAW
SRS016569_Baylor_scaffold_43846	SRS016569_Baylor_scaffold_43846__gene_58125	F051211	CYQKCVLLKQELQHIGITSQLLIGVFDWQDLQIPEHILKIRRQQYERHVILRVFIDEFAYDVDPSIDIGLTPTLPMACWDGKSSTTTMVPLRRLRVYRPHSLHERILSQLRRKIFRSNPESFYTAIDIWLATIRVS
SRS016569_Baylor_scaffold_45257	SRS016569_Baylor_scaffold_45257__gene_60180	F046433	MIELPTSPDALSELSPVAPPKLLLQAQDASRDNLMVYVKADDYLRTETSDPSFMKSRRETTEYKALNEFLYFMKMVEPYVPDHIKDDARELRNELVFLGMSELHFAATALAKRLRYHLEVDNKPVYIDVGNSLSQCRVKNEMKSSQYILSLVLSKFLDDEFEEYEGRLKVYGGRGEIDKSSKILFIDDWIIGGDQVRERISVFGAYNNPGAHKVSVLVMAASSSYINNGIVADSLWGEVTYPVEAYYRLKNDHNDWGVSRVTGIHSSTDSTFGCEVDDIAYRAIEGGILKGERIDRLTLPALVNIVRPYRNGED
SRS016569_Baylor_scaffold_5163	SRS016569_Baylor_scaffold_5163__gene_6651	F054109	MFKEKTYMTGRPKSKKGVKVHTAFKIYPKDKERAQIMADKLDMSLSAYINKAVLEKLTHDEKSEA
SRS016569_Baylor_scaffold_54892	SRS016569_Baylor_scaffold_54892__gene_77466	F103430	SQARHINNQEHTMIEQITIKAFIGSNNKTKELEVDKIISTVNANHEAFTLDYPVIGYWRGEAEETAVLYLSDEHQKVMNTLNQLKEVLDQEAIAYQIENDLQLI
SRS016569_Baylor_scaffold_56193	SRS016569_Baylor_scaffold_56193__gene_81635	F033081	MHTDITVVYRPKKGVMAWLFRRAMPQDTRPTFVWSRLVTEIENAGYFSRRKFSILAVGLIIMTIAMIKMLLFVPGLNQSVVSLLTRRLETFLPTGWATATAWTVGMAGVFLMGNFTNYTPSQKFLHKIKATRYEVYNTLLLLALLEEQAFRSGSERWNWRERVRASVCFGLLHITNIWYSFAAGIALSVTGFGFLLVYLWYYRKYRIQIIATAAAATVHALYNAIAISLIAVVLAIDIAKLL
SRS016569_Baylor_scaffold_8445	SRS016569_Baylor_scaffold_8445__gene_10884	F040149	VADEGAKELRWEVLIEEQGIPVLFVEVEAWYDGRVSSSEILRSVGIALEREPRLAPVWSHDSKDAIHDFIYDTSVPKGHTLT