7000000292: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 159369152

Overview

Basic Information

• IMG/M Taxon OID: 7000000292
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052815 | Ga0031310
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 159369152
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 78148901
• Sequencing Scaffolds: 16
• Novel Protein Genes: 17
• Associated Families: 17

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1
Not Available	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides thetaiotaomicron	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042387	Metagenome	158	N
F043991	Metagenome	155	N
F046433	Metagenome	151	N
F047127	Metagenome	150	N
F051211	Metagenome	144	N
F054109	Metagenome	140	N
F067846	Metagenome	125	Y
F068942	Metagenome	124	N
F071328	Metagenome	122	N
F071329	Metagenome	122	N
F072446	Metagenome	121	N
F077404	Metagenome	117	N
F080164	Metagenome	115	N
F081510	Metagenome	114	N
F085820	Metagenome	111	N
F094006	Metagenome	106	Y
F103432	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C1987324	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	502
C1992680	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	525
C2015476	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	665
C2033179	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	858
C2060476	Not Available	1957
SRS023958_Baylor_scaffold_10270	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	29750
SRS023958_Baylor_scaffold_12877	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	21154
SRS023958_Baylor_scaffold_14241	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae	18599
SRS023958_Baylor_scaffold_16780	All Organisms → cellular organisms → Bacteria	2196
SRS023958_Baylor_scaffold_16805	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	13337
SRS023958_Baylor_scaffold_16988	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1173
SRS023958_Baylor_scaffold_2444	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	13193
SRS023958_Baylor_scaffold_24934	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	56547
SRS023958_Baylor_scaffold_41386	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides thetaiotaomicron	1806
SRS023958_Baylor_scaffold_42896	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	10160
SRS023958_Baylor_scaffold_6960	Not Available	4943

Sequences

Scaffold ID	Protein ID	Family	Sequence
C1987324	C1987324__gene_98310	F051211	SDEVWSCYQKCVLLKQELQHIGITSQLLIGVFDWQDLQIPEHILKIRRQQYERHVILRVFIDEFAYDVDPSIDIGLTPMLPMACWDGKSSTTTMAPLRYLRVYRPHSLHERILSQLRRKIFRSNPESFYTAIDIWLATIRVS
C1992680	C1992680__gene_100145	F043991	SKKNPSVIDYFDLNGDLNEEAYEFEDVKLDEYIDKRSNIKPSWVGKYSHQLHFDLADDTEVSFYKGLNIVYADINFSNGIRTILFKCRQKKNLTRFISRVLEIAQGDLSNVHPDFRA
C2015476	C2015476__gene_107611	F071329	VAKIIISGLSSIGAGMIASKLTKPIVSNANGIAKILLWFGSVGTGVAASAIVAREVEKQFDETVKAVKEARDHIEIED
C2033179	C2033179__gene_113706	F042387	MAGLFLVSCSRENDKMTDETLANSAKMQLPTKVTIAENKKVISKRFEYQNDNELKEIIDEGSGERIVFVYEKDFITSKIRYSQAGEELGKANYQYNNGKLSSVIDEVVISDSGIQYKRVVTREYHYNGSEVSVNENIKYHSESYAYNLRDENFTHTYVLNGENITKIHHEISKNVPGGHFYLNPNNMVVVDEEVTYDAKNSPYKNIKGFSVLAVEFCGLDEDENTIADYLNFRWVSHNPALIQKSTNLYGSGADSSEYKFQYEYKNNFPIKTKLNINNQTVIMMV
C2060476	C2060476__gene_124108	F047127	MKKTFAFILLSIISLAKAQLTDIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERRQAVRLWDKDIFYLEFTDRKMNKRVFRQIPELKKNGKLFEIMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIVNIPVKGRYKKKLKALLSDKPEIAKEVDQMVGDRDIKEILEKYNSK
SRS023958_Baylor_scaffold_10270	SRS023958_Baylor_scaffold_10270__gene_13161	F068942	MIRKILSLPTLALCFTLGSALFAGCNEEEYIKDTKVRWSNVKNPEYGDPINITLKAEGETFTTMGDYPWISFRSYASTLDTFTSHSFSEADKDTAYYKDIVIYLTRNKRERTTTLKLVAPPNRTQQPKQFDFSIGVTPLGTYIFKVRQPALPAKAQ
SRS023958_Baylor_scaffold_12877	SRS023958_Baylor_scaffold_12877__gene_16393	F085820	MKSSFLTLFAMLFLAATFFSCETDEPAPRPTWGEIVNPIEAFMYPRDIKVYADDDDGRRWLILVLPDSTKSSFAPTSKSTPAEVARYKELSQLVGNPTEPVVNECNFRRTWLTQGVKAIRVVRTQADGRDEEVTAQCGNLSFYTYKQIFDCQFKCGDRSIFAKPLGEVVEADYQWLPGRDGFGLITPPNPDHLKQRIVLRLADGTEIEKELSEKGKK
SRS023958_Baylor_scaffold_14241	SRS023958_Baylor_scaffold_14241__gene_18328	F072446	MHEFDAQAQKNKFNPPTHPQMKKLVFLLFGLCLYGFTACDSDHEPTKPVRPFHGDTLAQIAWNFPYIVEHHYHSIPGIVPEGTTYRVPVIPRSVEDRTKKEYNEQDVDKVAHLVFRATVHGDTINRHKKEFETLARQLHALTLPTVGTSPVLCGVKSIKAVGVAENGRTYDLRREMKLRIRDYKSRRKYDSGRIVTLECEDTESMTARYVVVLGEIRKTELAEHIQPELKFYLPVKRCMDFSSIRFDITLFNGEVLSFQHKLPSKSVLQELPNNSVLENYKQYGFEREATYFTTMWPLPEKEIER
SRS023958_Baylor_scaffold_16780	SRS023958_Baylor_scaffold_16780__gene_21715	F046433	PPKLLSQAQDASRDNTVTYVVDDGYMGTMTSDPRFRKMRRETTEYKALNEFLYFMKMVEPYVPDHIKDDARELRSELVFLGMSELHFAATALAKRLRHLLEVDNKPVYVDVGNSLGQCRVKNEMKSSQYILSLVLSKFLDDEFEEYEGRLKVYGGRGEIGESSKILFIDDWIIGGDQVRERISVFGAYNNPGAHKVSVLVMAASSSYINNGIVADSLWGEVVYPVEAYYRLKNDHNDWGVSRVTGIHSSTDSTFGCEVDDIAYRAIEGGILKGERIDRLTLPALVNIVRPYRNGEDFDGLSRFRQLLEKG
SRS023958_Baylor_scaffold_16805	SRS023958_Baylor_scaffold_16805__gene_21755	F071328	MKWEFILEGEYIVEFVKLCKHLVLERTIDPNKHQAAAIYLRYSSQLLLKKKRAIRRLGIEKEYVSAILRQYGIHYREYGDNEHRVFFLDTGINIYFSKHHQSFIYIIQRIEFSNEEYRSFILKVLPVKKSEW
SRS023958_Baylor_scaffold_16988	SRS023958_Baylor_scaffold_16988__gene_22021	F094006	AKAPLTTLSRARVAAMRGALEPADPTGALYESAVCVEAHIGELQAGGIACRSLFAFGGSNVLAVAELGAEAPHAIDMYDIAVCEPLSELFAEELEYAFNLGA
SRS023958_Baylor_scaffold_2444	SRS023958_Baylor_scaffold_2444__gene_3050	F080164	MVGLTLCAAPQVTLRERASAFPLITEKAVSEIYAPYAWRLPVVPLSLDNREIRNFAKYPALPSLSEGKLTVRVLVVGDTVAVHQDLMDDFAKRCRATLGLGVRTAPKLFGIKGMHVYGVQKDGSRQAVDEQVTLHLPGFEKAEKPLHYKEQTGQLVLCEHYGSHRGDLLLNAANARPEIFGELCPVVDFHFPVELRRAYAWLLLEIELEDGTKLSTSLQHYDEQTSILDHPARS
SRS023958_Baylor_scaffold_2444	SRS023958_Baylor_scaffold_2444__gene_3051	F103432	MKLIHSLFSLSLLLALSGLFCTTACQDDAEPTQRAGLISTDSLIHAAKVYDGKAFEHVVSTTTAGLRVSEPRRVVPMLPRQLHVEMEGKTLFRRHNLPSVSAYSFQVLAVGDTIYRQKESDAQFNADLDALFHQSIGIAPRLFGVKELSVLGIDSRGKTRDLGNYSCPLLLGKIQNVNYRTREGVFHEHYEAASVDTFSVKDDWLLKTKAEPSLYVPSFRLLVWEQPAEGCTKLRFTLTLVDGRSLVAEVPLY
SRS023958_Baylor_scaffold_24934	SRS023958_Baylor_scaffold_24934__gene_33017	F081510	MHIRSSQVSPLWRTLFWQKHYKGVIKMKFDLNAVKATAKTTWVTTKILGKKYAPVILLGAGLIGYGYSVYEGIKSGKKLEATKAKYEEMEAAGEEFSRVDVVKDIAKDVAIPVAVATASTASIILGFAIQTNRLKAVSAALAMVTEEHARYRLRAKTVLDEETFKKIDAPLETKTVNVDGEDIEVESIVPNEGDFYGMWFKKSHKYASDSPEYNEGVIKEADNVLTEKMMRKGMLTFAEVLDILGFEVPKAALPFGWTDTDGFYIEWDAHEVWNDNKQEYEVQFYVRWKTPRNLYATTNFHDFVPKKTRKELN
SRS023958_Baylor_scaffold_41386	SRS023958_Baylor_scaffold_41386__gene_58680	F077404	MNILKTAFAFFFALCFMMGANSYAQKTESINAEASKNELKRNAVYLPPALEEYADTTLLHQRFIVENKGNYLYIPFTEDNEPTIPFNYGFLHPLGERFYNCFMGKVDRILRPKEDKGFIILTNYLVVLDDKYAFDTSNKDTSKLADLKYLDFRHIKSDFSYGHPYQGFTDYDRVELSNFVQSYGRQAALETAKAWVMASYPFSLQSTKFENLYTRGRKLILTDGKTTLYLYFLMIDSVALNFDTKVLPYIKGVFRFNRIQ
SRS023958_Baylor_scaffold_42896	SRS023958_Baylor_scaffold_42896__gene_61770	F054109	MAGRPKSKKGMKVHTAFKIYPDDKARAQAMADKLDMSLSAYINKAVLEKVARDEKSET
SRS023958_Baylor_scaffold_6960	SRS023958_Baylor_scaffold_6960__gene_8849	F067846	MSIIADWERQEFNKWDRQCSKEDDYNRAIEMEIEAIKENISNCDDDVICSFREKMLDYCEVINAFDDDTFNDDEFIKAIALGTDYEEMRIKILTAMAEDRLEQLEKDYRNGYILND