7000000288: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 159510762

Overview

Basic Information

• IMG/M Taxon OID: 7000000288
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052811 | Ga0031084
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 159510762
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 170625023
• Sequencing Scaffolds: 24
• Novel Protein Genes: 27
• Associated Families: 24

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Riemerella → Riemerella anatipestifer	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis	2
Not Available	3
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae → Cardiobacterium → unclassified Cardiobacterium → Cardiobacterium sp.	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F022002	Metagenome	216	Y
F043235	Metagenome	156	N
F043991	Metagenome	155	N
F045567	Metagenome	152	N
F046431	Metagenome	151	Y
F046432	Metagenome	151	Y
F049707	Metagenome	146	N
F051213	Metagenome	144	N
F053092	Metagenome	141	N
F055792	Metagenome	138	N
F061925	Metagenome	131	N
F064819	Metagenome	128	N
F066860	Metagenome	126	N
F070224	Metagenome	123	N
F077403	Metagenome	117	N
F084362	Metagenome	112	N
F089055	Metagenome	109	Y
F092230	Metagenome	107	N
F095630	Metagenome	105	N
F095632	Metagenome	105	N
F097526	Metagenome	104	Y
F098763	Metagenome	103	N
F101359	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C3464827	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	640
C3482859	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	703
C3530382	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	998
C3554081	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Riemerella → Riemerella anatipestifer	1347
C3559907	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1495
C3564588	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1648
C3575158	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2265
C3575922	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	2337
C3587268	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	5757
SRS024087_LANL_scaffold_15978	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis	9128
SRS024087_LANL_scaffold_22413	Not Available	1189
SRS024087_LANL_scaffold_23914	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	20874
SRS024087_LANL_scaffold_26167	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis	1433
SRS024087_LANL_scaffold_49359	All Organisms → cellular organisms → Bacteria	245738
SRS024087_LANL_scaffold_58488	All Organisms → cellular organisms → Bacteria	43898
SRS024087_LANL_scaffold_60036	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	7993
SRS024087_LANL_scaffold_61433	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	5224
SRS024087_LANL_scaffold_63876	All Organisms → cellular organisms → Bacteria	2711
SRS024087_LANL_scaffold_65648	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	3956
SRS024087_LANL_scaffold_72976	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1436
SRS024087_LANL_scaffold_73465	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae → Cardiobacterium → unclassified Cardiobacterium → Cardiobacterium sp.	2477
SRS024087_LANL_scaffold_74222	Not Available	1745
SRS024087_LANL_scaffold_75327	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	12524
SRS024087_LANL_scaffold_75652	Not Available	25457

Sequences

Scaffold ID	Protein ID	Family	Sequence
C3464827	C3464827__gene_235348	F092230	MVDKLKTHLLKAFLPLFIVCIIFVTFFRQIDCGSEGGYAFQISEWGAKLKNIYGTDFINKEIIVRDNTVQVDGIRCLYAVNQNEDGLSIYLLLSGGKYLTHNYVGSSFVKFSHSSEYSNMAYGEGSVEVSDSTSTGEVQNTEEKETLNKVDEAINNMRHLFASAIMVNLRVVELYKILTGCMILIAIVVIAGYYSYLKPETVYELYCKL
C3482859	C3482859__gene_243710	F101359	MKKFLSKRSILVGALALVLGFIVSSCSRDKDDDAIYTAKLQVQYQGNNSINGSVTYRDANGNKRKIYLRSGMSESISFEVNKGFKSFVEVKATDIYGNLFVKWTVTKTYTGTRVQNWSTNFTSYTGQGITDSYKETVK
C3530382	C3530382__gene_267061	F045567	MVTEDVVHTSTHRVEDALLAVDGDILTPRDGTYIVQTERVVVVLVSQEDRIDTIDTETCGLVVEVRATVDEDTLPALGDDEGRGAQTTVTSIRAMAHWAATAYLGDTSAGARTEKNYLHVSRRESYHGKE
C3554081	C3554081__gene_280085	F064819	MILKDNQGKDRIKFSDIVRLNKEEPVFVKMKVRISTETMVSEENLDIERSDLEDLTRNLKDLCEYKIRKFFFQNIDETIEIVFSINDIGTIAVEGKMYDKNYMNSINFSFQTDLNGIATFSKEISQEIEKCK
C3559907	C3559907__gene_283523	F089055	CVIKTPEIEAREKLAAIFSDAERCDNSKVNPELGKTAIDIENTSRMNSADDGAVYLCNQALGGYEKSLDYINNSPLKTVREIGDLLQSFRKGKAEESCR
C3564588	C3564588__gene_286298	F061925	MSWEYSFNLDSEESVSLVVMDLKNCELFSSSTTDYIDWKNPESMDDIPYDARFYTDKKKTIYIAINSFSKNIFSALKSILAKHDYHLTDCDTDEEVTLEHIFRSVI
C3575158	C3575158__gene_292741	F066860	MTTKKQKLQKQQTIDTWIVIALWASAIWFSLARGFITGIGGWVLALLGPWALIVSCICLAIISRQVKKRHASKDHLTTIVRASFIVMSISLFICGLAMPDFSDIETFSTLSVYTNNAISFETSKAIAIISGFVVVLSLFVAVTFGIAEDREETTEDVAI
C3575922	C3575922__gene_293226	F043235	VDEFGTQLTDTLLDRPDRSKRELHQWAVNGDDIVQLRHMDEVVPSDEGHLLIDLCDDDPRSLCSGLGIVTRYPEGAIALFIGLAHRDQCDIDRIDTIPKEVWEFMEVTREIVDTLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRCMASNVLLPGSAH
C3587268	C3587268__gene_300904	F070224	MKRLLFLLLTLLHCTVWSQVHNAPDSIYVASGAVYIPPISGEPIYLFASPLKSGHTPGHKLRTRDWVKVDYSDRNNIIVRKVGGSLIIENLFIYYAAGFPGMKEYELYHKGTGEEITKEVFDSIKFSRMPTALREIKKYKLPRTRRSSGEVDRWQHPHLLVVEHDKKAGRYYKYRIALVIYMDYNHPEACIIH
C3587268	C3587268__gene_300905	F070224	MKRLLFLLLTLLHCTAWSQVYNAPDSLYVVISGVYIPPISGEPIYLLASPLRPVKPRGSKKRTRDWVKVDFSDQNNLIVRKVGDPLVIENFFAYYAAGFPEMKEYELYYKGTGEEITKEDFDSIKFTRMPMALREIKKYKLPRTRRTLREVDRWQHPHLFVIEHDKKASRYYKYRIALVIYIDYHHPEAYTVH
SRS024087_LANL_scaffold_15978	SRS024087_LANL_scaffold_15978__gene_20859	F051213	MNLYKILGALILALSFVFTSCDWVANEPTIEGGRYKTFDSSAQRKSFRVVNASGKRYNHKVDWDIIGITQLDSDTFFTKKVDTLSNGNLKISYDWVSFTVKENKSVIEVEVQKNETGQDRSVLFATSNSRTQTHRPNMIITQRAK
SRS024087_LANL_scaffold_22413	SRS024087_LANL_scaffold_22413__gene_28841	F022002	ALLLSLPSHAQDGRSKVPINRTISGFTLGVTTPAEARAIIQRQGGKIIQEVGIHAGSNDVSYIVSGLNYARRPTQTVDMFFYKGHLRRIYFSFDGWDVLEQIESELEDKYGMMIESEGMFKKKGIVDAFTSLEVVRTFEYEGHVRIDHAYIAYTDEELERARSAEKESEI
SRS024087_LANL_scaffold_23914	SRS024087_LANL_scaffold_23914__gene_30758	F043991	MGKNKPSAVDGFDLNGNVIEEANEFDGVLIEEWVNQRSPLKPSWVGRYSDQMHFDLKDGTEVSFYKRPDIVYGDILFAEGIRTILFKCRQKKNLTRFISRVLKLAEMGPSSVHPDLRA
SRS024087_LANL_scaffold_23914	SRS024087_LANL_scaffold_23914__gene_30761	F018385	MAEYVNRWDPYSELSIEKDRDPVLDDHLIYGTNVEHYTLTVYSPEGRVSKYWNARILKDDLGRCRIACPREGKILCFSWFDWDAHMFTHDGMNELVFAPKLNSRSPQSLWSKKEVK
SRS024087_LANL_scaffold_26167	SRS024087_LANL_scaffold_26167__gene_33719	F053092	CLTHALLVLGALILEPAEMEDTMDDHAVQLFGVLGAKELGIATHRIKADEHVPRDHIPLTLVEGDDIGIVVMIEKVLIGLQDALITTELVAELADTTVIASSDLTDPVAKDTLSEARLLDVFVCIVSYKLRFFRHK
SRS024087_LANL_scaffold_49359	SRS024087_LANL_scaffold_49359__gene_66298	F046432	MQMSESRLGEVISKFQMPQDRYLIEQEGSFGRGEFFRVIKNQTTHQKYLLMNTYSHHGVESELEYYREEGFSNLEAIPRRIETLEIPSDAEDEISKYLFGFYSIFEIKS
SRS024087_LANL_scaffold_58488	SRS024087_LANL_scaffold_58488__gene_79573	F095632	MTMSFKETTGYKVASLVASTSASITAGAVVGALCPPAGVVLTAVYGIGSSVLGTYVGDKAGRQYAETIAETIDSMKTPSTN
SRS024087_LANL_scaffold_58488	SRS024087_LANL_scaffold_58488__gene_79593	F049707	VVSEYKSPHNDGHDPYILIWEYGNDAQRAEFSERWATFGADGRTIWHFRLVDGGVMTFSSREWEQKDDVNHLTTIHFQPTIQNNEKELT
SRS024087_LANL_scaffold_60036	SRS024087_LANL_scaffold_60036__gene_81878	F077403	MSAIYAEERISVHFEVRWHRERNPMDTLRRELDVPYLHVVYQNHTDTAYYLVRQDQSNWIFPRLRYYTVIEAIPRTEELSLTHYVPRWATFMLHARGAELQKRKVLTRQVLLQDQAWEVELEPSILDGKPKPRITYEEGISNWSEQAYYLQGYLYYLLTPQLDHDWYQVTYLLEHMNHSVGTEMTGTEGVLKPFVHHLAFLPARSRREYVYSLLAFRLIRGRWHFMLPDWEASARLRDEGTSLNVYLLRDQEAPTSPQGYALPDRYEGYQLY
SRS024087_LANL_scaffold_61433	SRS024087_LANL_scaffold_61433__gene_84131	F095630	MRYSSLYKISKDNGLLAHVYEHLLAQYILKYLQDRGFFISSDIILTAKTYGDTCYMDAELHNPAAPNIYDEALRAFDKYAIPEKAVRRAVSECGIEMNRAVLELNRDELMPNLRVLQSSEWCQQSEMTYRKSYDKSSVDTLFCVPYLKYGKKSKKLFPEYVLEYSIDEEYINSPIDQALTAIVVQTVALNFLVAVRENHIVYDRGDQWSEASLSVGYRIFLGLAKEDKQITSQLKHEFAAYIQYLLKSPFCSNLQKALIRCSCNLEQVLLGRSTLNNILGGCVIGGRGWLEMADDVRIKQMITVIQLDVYDI
SRS024087_LANL_scaffold_63876	SRS024087_LANL_scaffold_63876__gene_88122	F055792	MEIASQTLDSTSAVTHRILLLTTQLGESLLASFGAEDGVIAEAMVTRALESNLPIDSTLEEVGPVLIDKGDDGTEAGTTWGRYTLETLQKEGYILFEGSMLPCEARRVDSRSSIKSLDLESRIIGKAMKPVALPHVARLDEGIPLQRIGGLRDLLVTPDVSQADDL
SRS024087_LANL_scaffold_65648	SRS024087_LANL_scaffold_65648__gene_91299	F046431	MKRISKIGITIILILSIIISYGSVIISMAAESELTLTPKPETNNIHLKWTGPQNSSYKVYQKKPGSSTFETIGLTDFSNNATDEEVKVLNVYPHSKNIGKLWEGSSAFQTLPMVNVTYLDGHTETIEKSALLKVWMEGRNSK
SRS024087_LANL_scaffold_72976	SRS024087_LANL_scaffold_72976__gene_106927	F098763	MDRRASLRVLSTALYLATKLFEAVVWTMISYDPSDEVEGKGGMNAIPTAVDE
SRS024087_LANL_scaffold_73465	SRS024087_LANL_scaffold_73465__gene_108453	F097526	MTTNDTKAITIYTQDDYRRLCERLDDNTVTALLHAHIRAFAADGSQALLKRLTEGLRIAGEMEKAGRNGHPDPAEQARRERWDCQFTVLQQQARMAHCEIVNADNAAVSRLTRQCEKNGSCDTAIPLPRDDYGFAAALRDFPLNEHQTALLWRMALLTIAEITDATPSLVAHYLNGIGGEHLGRALAGKTVYPVTVVSNLA
SRS024087_LANL_scaffold_74222	SRS024087_LANL_scaffold_74222__gene_111036	F022002	EARAIIQRQGGKIILEVGVQAGSKDASYIVSGLNYARRPTQTVAMFFYKGHLHSIDFIFDGWDVLEQIESELEDKYGMMIESEGMFKKKSIADAFTSLEVVRTFDYEGHSMSKNAYIAYTDLELERARSAEKESEI
SRS024087_LANL_scaffold_75327	SRS024087_LANL_scaffold_75327__gene_115894	F077403	MDTIMPLLRRLVLIILLLSAVRAIHAEERVSVHFEVRWHRERNPMDTLRRELDVPYLHVVYQNHTDTAYYLVRQDQSNWIFPRLRYYTMIEGYPRRERISDTHYVPKWSTNALRFYEERVRRHITHQVLVWDQAWVVDLEPSIVDGLPKPRLDYQYPHANWSECAYYLQGHLYYLLTPQRGHDWFQVSFLPDHAAHSVATEAVVTEGELRPYVHRLAFLPARSRREYVYSLLAFRLIRGRWHFMLPDWEASARLRDEGTSLNVYLLRDQEAPTSPQGYTLPDRYEGYQLY
SRS024087_LANL_scaffold_75652	SRS024087_LANL_scaffold_75652__gene_118415	F084362	MNCTFTVRWSDEKNKPHAKTYATESDAKRAKKWLLEHGVRSVDIAVKINNKPAGSLKDDKPSETDAEQKGFWWEK