7000000285: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 159005010

Overview

Basic Information

• IMG/M Taxon OID: 7000000285
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052808 | Ga0031079
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 159005010
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 198125826
• Sequencing Scaffolds: 23
• Novel Protein Genes: 24
• Associated Families: 22

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ct89S11	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	6
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	4
All Organisms → Viruses → Predicted Viral	2
Not Available	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F033081	Metagenome	178	Y
F040149	Metagenome	162	N
F043235	Metagenome	156	N
F043991	Metagenome	155	N
F045567	Metagenome	152	N
F047508	Metagenome	149	N
F051211	Metagenome	144	N
F051213	Metagenome	144	N
F053092	Metagenome	141	N
F063777	Metagenome	129	N
F063778	Metagenome	129	Y
F066860	Metagenome	126	N
F067846	Metagenome	125	Y
F071329	Metagenome	122	N
F076191	Metagenome	118	N
F077403	Metagenome	117	N
F084362	Metagenome	112	N
F090517	Metagenome	108	N
F095630	Metagenome	105	N
F103434	Metagenome	101	N
F105378	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C7125065	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ct89S11	685
C7128379	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	695
C7179579	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	925
C7238749	All Organisms → cellular organisms → Bacteria	2366
SRS023595_Baylor_scaffold_16816	All Organisms → cellular organisms → Bacteria	21769
SRS023595_Baylor_scaffold_16918	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	5009
SRS023595_Baylor_scaffold_21165	All Organisms → cellular organisms → Bacteria	9960
SRS023595_Baylor_scaffold_44064	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	7612
SRS023595_Baylor_scaffold_44787	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2749
SRS023595_Baylor_scaffold_49345	All Organisms → Viruses → Predicted Viral	2892
SRS023595_Baylor_scaffold_57331	Not Available	71382
SRS023595_Baylor_scaffold_70385	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	3102
SRS023595_Baylor_scaffold_8662	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	19043
SRS023595_Baylor_scaffold_86783	All Organisms → Viruses → Predicted Viral	1673
SRS023595_Baylor_scaffold_9005	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	16847
SRS023595_Baylor_scaffold_92753	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis	7971
SRS023595_Baylor_scaffold_93060	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	1224
SRS023595_Baylor_scaffold_93988	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	6799
SRS023595_Baylor_scaffold_94201	Not Available	1441
SRS023595_Baylor_scaffold_96085	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis	12169
SRS023595_Baylor_scaffold_97949	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	29006
SRS023595_Baylor_scaffold_98511	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis	8551
SRS023595_Baylor_scaffold_98934	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	11251

Sequences

Scaffold ID	Protein ID	Family	Sequence
C7125065	C7125065__gene_313049	F043991	MSKKNPSIVDYFDLNGDLNEEAYEFEEVKLEDYIDKRSNIKPSWIGKYSHQMHFDLDDGTEVSFYKGRNIIYADILFSGGIRTILFKCRQKKNLTRFISRVLELSQGEPSNIHPDFRA
C7128379	C7128379__gene_314766	F066860	MTTKKQKLQKQQAIDTWIVIALWASAIWFSLARGFITGIGGWVLALLGPWALIVSCICLAIISRQMKKRHASKDHLTTIVRVSFIVMSISLFICGLAMPDFSDMETFSTLSVYTNNAISFETSKTIAIISGFVVVLSLFVAVTFGIAEDREETTEDVAI
C7179579	C7179579__gene_342158	F063777	LKVLNIKISALPPENNSFWMKLLLYLCIPFLFIFAILLLIGWGIYSGISSIISAVKEDFFGIKDKTNIKTSKNILFENEQFKLKKEDYLPDENSQEYKIFDDFCAKSNEHLDDDGYIFYKLTDEKSATDLNGAIISEFQEDIGNYILLQSLILEDNQLKNQLISFDKNTGKIMVLADIKDFFWLEFDSETKTINGYNNKEQIE
C7238749	C7238749__gene_379330	F051211	MRVKKAIKIFEKIRDLPYGTSGSDEVWSCYQKCVLLKQELQHIGITSQLLIGVFDWQDLQIPEHILKIRRQQYERHVILRVFIDRSTYDIDPSIDIRLAPTLTIAHWDGTSSTATMASLKHLRIYRPHSLHKRILSRLRRKLFRGNPKEFYTAIDKWLADTRAHRSS
SRS023595_Baylor_scaffold_16816	SRS023595_Baylor_scaffold_16816__gene_14456	F103434	VVEVTLAVIKEGRTGRRFERGETFVIDKVLVQPSAGNALKATENRVIRGDLTDETTLKIMGTGRKWPGGPHSWVKIIKGPDALVGKTFQQAGEPLTYDASPMTHHFSVRCDTLGTESR
SRS023595_Baylor_scaffold_16918	SRS023595_Baylor_scaffold_16918__gene_14557	F090517	MNRRIFSFCGLLLGLLFLASSCKKDTPLPPQLSEGELRQTVWNGTLEHKNAKRDSYSVYLNFLSDSEVEVSGYDLKDPTYPRDVQVRYYYTITDRILTLKAQVNRELHPPMDQNTWYLIRKEPSLLVFQANAGNPDREATLTLRRKL
SRS023595_Baylor_scaffold_21165	SRS023595_Baylor_scaffold_21165__gene_18297	F051211	MKAKKAIRIFEKIRDLPYGTSGSDEVWSCYRKCVLLKQELQHIGITSQLLIGVFDWQDLPIPEHTLNLRRQRHERHVILRVFIDGSTYDIDPSIDIGLAPTLPIAHWDGTSNTATMASLKHLRVYRPHSLHERILSRLRRKLFRGNPKEFYTAIDKWLADTRAHHSS
SRS023595_Baylor_scaffold_44064	SRS023595_Baylor_scaffold_44064__gene_40615	F095630	MRYSPLYKTSKDNGLLAHVYEHLLAQYVLKYLQDKGFFISSDIILTAKTYGDTCYMDAELYNPAAPNAYNEALQAFDKHTIPEKAVRRAVSECGIEMNRAVLELKQDDLMSNLSRMQSSDWRQQSEMTYRKSYDKSSVDTLFCVSYLKYGKKSKKLFPEYVLEYSIDEEYINSPIDQALAAIIMQAVALNFLVAVRENYTVYERGDQWSEASLSVGYRIFLGLAKEDKRIASQLKHEFTAYIQYLLKSPFCSNLQKALLRCSCNLEQVLLGRSTLNNILGGCVIGGRGWLEMADDARIKQMIAAIQLDVYDI
SRS023595_Baylor_scaffold_44787	SRS023595_Baylor_scaffold_44787__gene_41310	F033081	MYPPDLMVVHRPRKGVMAWLFRRAMPRDTRPTFVWPKLAVEIGNAGYFGRRWLTAIATVLIIVTIATIKVLLMIPGLDSSVVELLTSIFETFLPARWATGAAWVAGAVGVFLIGDFTNYTKKQKSLHGLKATRCGVYDTLLLFALLEEQAFRSGSEKWSWRERVRASVCFGLLHITNIWYNFSAGIALSVTGFGFLLVYLWYYRKYRSQVVATAAATTLHTLYNVIALSLIAATAVLYAAISIIKVL
SRS023595_Baylor_scaffold_49345	SRS023595_Baylor_scaffold_49345__gene_45974	F067846	MESLQAQWERKPFNDWDKQCGKEDDHNRAIEMEIEAIKEDIANGDDDAICLFSEKMFDDDEFLKAVALGTDYEEMRIKILTAMDEDRLKQLEEDYRKGFILND
SRS023595_Baylor_scaffold_57331	SRS023595_Baylor_scaffold_57331__gene_54762	F105378	MNINVYVDNIKKWVQISSDEVLDRNKNLSDLKDKNAAIINLGLYDKFISKEALESGFLPDIFTPENIVTDSNHQFVTDAEKNKWNNKLNKPIANQDHLEENQIGYDELNEKFYIGLNNKNVLIGGASALDNVKVINGFFSGNSQATVIRNTKQNENGEFIRPIFVDVQCTEYTGGDLGEISVTYTTEAINVYNTGSFTGSFQCMIVYPLGSANR
SRS023595_Baylor_scaffold_70385	SRS023595_Baylor_scaffold_70385__gene_69861	F095630	MIYSSLYKTVENNGLLAHIYEHLLAQYVMKSLQGRGFFISSDIILTAKTYGDTCFIDAELYNPAAQKAYGEALRLFDEWDIPGDAALRTAGECGIEMNRVVAELKQDELLRSLNMVQLSAWHQQSDLTYRKADDKSSVNTLFRIPYVKYGRKSKNIFPEYVLEYSVDEKYIQSPIDQALAAVVMQVAALNFLVMIREKHTVYDRGDQWSEASKSVGYRMFLGLIKKDDNIVDQLKREFMEYVQFLSASSFCDNLQAALVRCSHNYEQVLLGRDTLNSILGGCVIGGKGWLRIADNRRIQQMLAVIELDVYSI
SRS023595_Baylor_scaffold_8662	SRS023595_Baylor_scaffold_8662__gene_7164	F047508	MLGHRLVEGCVKYPYLRDLGEHLRHSLDTEDVGWVVKRSKLCALMEHIYHLRGDTYALSKALCTVYEAVTDGVNLIEGLYEVLFFENVEDNFYAACVVRNVKVALDLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQGGAATVEDQDFHKVLYYMVRCELILSSP
SRS023595_Baylor_scaffold_86783	SRS023595_Baylor_scaffold_86783__gene_91307	F071329	MRPLYSKGILMLPVAKIIISGLSSIGAGMIASKLTKPIVSNSNGIAKILLWFGSVGTGIAASAIVAREVEKQFDETVKAVKEARDHIEIED
SRS023595_Baylor_scaffold_86783	SRS023595_Baylor_scaffold_86783__gene_91308	F018385	GLHPWSLSLTIGVLGLMVEFVNRWDPYAEVPIETHRDPVKDDPLIYGVNVPHFTVTVYSPDGRVNKYWNARILEDMLGYCRIACPRDGKILKFKWSDWSVYMFTHDGLNELVFMPDSGRKIITQLFEKEVN
SRS023595_Baylor_scaffold_9005	SRS023595_Baylor_scaffold_9005__gene_7567	F045567	VHTGTHRVEDALLPIDGDILTPRDGTYIVQTERVVVVLVSQEDSIDTIDTETCGLVVEVRATVDEDTLPTLGDDEGRGAQTTVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHG
SRS023595_Baylor_scaffold_92753	SRS023595_Baylor_scaffold_92753__gene_101637	F053092	MQSDQGLILCLTHSLLVLGALILEPAEMEDTMDDHTVQFFGVLVAKELGIATHRIKADEHVPRDHIPLTLVEGDDISIVVMIKKVLIGLQDALITTELVAELADTAVIAGSDLTDPVAKDTLSEARLLDVFVSIVSYKLRFFRHK
SRS023595_Baylor_scaffold_93060	SRS023595_Baylor_scaffold_93060__gene_102195	F063778	MPETISEGAKQQLLQQLQDALGLVKDADTSTHDVAAITHSAADGHQLTEVMLQQMTAIEAYLKNCQVSINDAMGNIEAIPLDPPPED
SRS023595_Baylor_scaffold_93988	SRS023595_Baylor_scaffold_93988__gene_103992	F084362	MNCTFTVHWSDEKNKPHAKTYATEVDAKRAKKWLLEHGVRSVDIAVKINNKPASSLKDDKPSDTEAEQKGFWWQE
SRS023595_Baylor_scaffold_94201	SRS023595_Baylor_scaffold_94201__gene_104445	F077403	MKITMPIYRGLPLAILLLSAMSAIYAEERISVHFEVRWHREDNPMDTLRRELDVPYLHVVYQNHTDTAYYLVRQDQSNWIFPRLRYYTVIEAIPRTEELSLTHYVPRWATFMLHARGAELQKRKVLTRQVLLQNQAWEVELEPSILDGKPKPRITYEEGISNWSEQAYYLQGYLYYLMNPQQAHDWYQVSYLPDHAMHSVATEAVVTEGELRPYVHRLAFLPARSRREYVYSLLAFRLIRGRWHFMLPDWEASARLRDEGTSLNVYLLRDQEAPTSPQGYALPDHYEGYQLYQGLVRGDSIWIEM
SRS023595_Baylor_scaffold_96085	SRS023595_Baylor_scaffold_96085__gene_108226	F043235	MDEVVPSDKGHLLIDLCDDDPRSLCGGLGIVTRYPEGAIALFIGLAHRDQCDIDRIDTIPKEVWEFMEVTREIVDTLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEGFHLREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLLPGSAH
SRS023595_Baylor_scaffold_97949	SRS023595_Baylor_scaffold_97949__gene_112649	F076191	MKIIAESPAEEALLWRIKALSDELVNQDNRCTNMPVWTILDNNKAGKDYGAVMYFTGKAAEQHIEENDDYYDNPTTYIRSAHHNQELKDVIHLLILAGGNEIPSNHYRSLSNA
SRS023595_Baylor_scaffold_98511	SRS023595_Baylor_scaffold_98511__gene_114089	F051213	MNLYKILGALILALSCVFTSCDWVDNEPTIEGDIDKYFDSNAQRKSFRVVNASGKRYNHKVDWHIVGITQLGLKTYLTEKVDTLSNGDLKISYDWVSFTVKENKSVIEVEVQKNETGKDRSVLFATRNDDKQAHLPDMIVTQGAK
SRS023595_Baylor_scaffold_98934	SRS023595_Baylor_scaffold_98934__gene_115472	F040149	VADEGAKELRWKVLIEEQGIPVLFVEVVAWYDGRVSSSEILRSVGIALEREPRLAPVWHYDSEDAIHDFIYDISVPKGHTLTAVRERETVVMQLFNIHRMF