7000000270: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 764325968

Overview

Basic Information

• IMG/M Taxon OID: 7000000270
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052788 | Ga0031328
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 764325968
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 85651467
• Sequencing Scaffolds: 10
• Novel Protein Genes: 10
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → Bacillus cereus group → Bacillus thuringiensis	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	2
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
Not Available	2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043235	Metagenome	156	N
F046431	Metagenome	151	Y
F047508	Metagenome	149	N
F054110	Metagenome	140	N
F055792	Metagenome	138	N
F067846	Metagenome	125	Y
F067847	Metagenome	125	N
F082826	Metagenome / Metatranscriptome	113	Y
F094007	Metagenome	106	N
F105378	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C6899804	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	530
C6915831	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → Bacillus cereus group → Bacillus thuringiensis	587
C6965321	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	981
C6965923	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	991
C6968689	All Organisms → Viruses → Predicted Viral	1039
C6970947	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1084
C6984834	Not Available	1549
SRS048411_WUGC_scaffold_21908	Not Available	1772
SRS048411_WUGC_scaffold_26941	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	508
SRS048411_WUGC_scaffold_28246	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	5757

Sequences

Scaffold ID	Protein ID	Family	Sequence
C6899804	C6899804__gene_96529	F067847	MFSHIIRVRGIFDDEPTTKKLYFHMSRREMFDFIKRYDNVTNFEKWLQAAIDNEDLYTMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPALVREFYNGILPEKIMKQAQQDPKYKE
C6915831	C6915831__gene_105832	F046431	KIIIVSILLIIMLTYTQTLVFATESELTLTPKPETNNIHLKWTGPLNSKYRVYQKKPGSSNFETIGLTDFSPEAIDEEVKVLNVYPHSKNVGRLWPGSTAFQSLPMVNVTYLDGRTETIEKSALLKVWMEGRNIK
C6965321	C6965321__gene_138464	F054110	VNYQPTIKKLLKALQMNGRRYVVDTRQSWSKYDKPCKVYIVSRMYTEEEYKLTFPEKYKKGKTFKEKQLYKKESEYSST
C6965923	C6965923__gene_138918	F043235	SDEGHLLIDLCDDDPRSLCGGLGIVTRHPEGAVALFIGLAHRDQCDIDRIDTIPKEIWEFMEVTREIVDTLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEDFYVREALAIIVEGFGETAGGCHSMAKDQEVPALYCRSHGVKGGRSMASNVLLPGSAH
C6968689	C6968689__gene_141088	F067846	MSIIADWERQEFNKYDRRCCAEDAYNEAVEREIECIEEDISNGDSEELWKFSEKAFEDDDFVKAIALGNDVEEMRICILKSLAEERIEQRRKDYEKGFILND
C6970947	C6970947__gene_142857	F082826	MSKYTIKFNYKASIVIEVEGDFRHEGDALDKAREIAEDADIEEFNIGEEMESKILNVE
C6984834	C6984834__gene_155023	F105378	MNVKVYVDKIKKWVQISSDEVLDVNKNLSDLKDKEAAITNLGLYEKFISKEALESGFLPDVFTPDNIVTDSTHQFVTDEEKSKWNNKLNAPVPMQDHLENNQIGYDSTNSKFYIGLNNQNVLLGGSSCFDNIIVVNGFFSGNSQPTVIRNNKFNEAGQLITPVFVDVQCVEYTAGDLGEVSVSYTADSISIYNTGSFTGSFQCLIVYPLGSVNE
SRS048411_WUGC_scaffold_21908	SRS048411_WUGC_scaffold_21908__gene_9497	F055792	VEIASEALDSTSAVAHRILLLTTQLGESLLASLRTEDGVITEAMVTGALERDLAIDCALEEVRPVLIDKGDDGTEAGTTWSRHPLETLQQEGNILFEGSMLPCEACGVDSRSSVKSLDLESRIIGKAIEPVALPDVTCLDESIPLQGIGGLRDLLVTPDVSETDHLQTSREEGTDLLQLMGIIARKYQLFHTFVS
SRS048411_WUGC_scaffold_26941	SRS048411_WUGC_scaffold_26941__gene_13927	F094007	LKTVEVLELARPSRAGVIDVVDSDGNVVPLDYLGEDFVPDANSYSDEDFTKRNRIIVEMCDLFGRIRRRAGFAERHRGRGDYDRARRIERNRGSDISEVGRLAISACETCPLKLDCELYGKLGGAALSDVLDYKKVRTATSLTKAGKRRSGWNKGCIDNNA
SRS048411_WUGC_scaffold_28246	SRS048411_WUGC_scaffold_28246__gene_15933	F047508	MLGHRLVEGRVKYPYLRNLGEYLRHGFDTEDVGWVVKRSELCALMEHIYYLWGDTYALCKALCTVYEAVTDGVDLIEGLHEVLFFENVEDNLYAARVVRNVKVALNLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQGGAATVEDQDFHKVLYYMVRCELIPSSP