7000000267: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 159611913

Overview

Basic Information

• IMG/M Taxon OID: 7000000267
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052785 | Ga0027955
• Sample Name: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 159611913
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 22883433
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria	1
Not Available	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F077405	Metagenome	117	N
F081510	Metagenome	114	N
F103431	Metagenome	101	N
F105378	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C1192166	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria	506
C1208720	Not Available	867
C1219427	All Organisms → Viruses → Predicted Viral	4335
C1219595	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	6032

Sequences

Scaffold ID	Protein ID	Family	Sequence
C1192166	C1192166__gene_25388	F103431	MIDFDALIVGMLFFIQLFLQSIAWRVAIAHFLHAERGNAAAAAFDGAFGEDIADCHAE
C1208720	C1208720__gene_35180	F077405	ALPTELFPRLLVAKQRGVFYGFISWCQIKFVKKFFD
C1219427	C1219427__gene_44962	F105378	MNVKVYVDKIKKWVQISSDEVLDVNKNLSDLKDKEAAITNLGLYEKFISKEALESGFLPDVFTPDNIVTDSTHQFVTDEEKSKWNNKLNAPVPMQDHLENNQIGYDSINSKFYIGLNNQNVLLGGSSCFDNIIVVNGFFSGNSQPTVIRNNKFNEAGQLITPVFVDVQCVEYTAGDLGEVSVSYTADSISIYNTGSFTGSFQCLIVYPLGSVNE
C1219595	C1219595__gene_45351	F081510	MLSKTKGETKMKLPNMKTIKSAAKHSYTVSKILAKKYAPVALVTTGLVGYGVAVYKGIQSGKKLEATKAKYEAKDEAGEEYTRMDVVKDVAKDVAVPVAIAVASTAAIGLGFAIQTNRLKAVSAALTMVTEEHARYRLRAKEVLDEETFKKIDAPIETKKVEIDGKEVEVESIVPKEGDFYGRWFKYSRHYASDDPDYNEAWVKEVDNMLTQKINTQSGGGMLTFAEVLDALGFEVPKAALPFGWTDTDGFYLEWDTHEVWNEDKQEHEPQIYVRWQTPRNLYSTTNLRDIIPGRKELA