7000000232: Human stool microbial communities from NIH, USA - visit 1, subject 764285508

Overview

Basic Information

• IMG/M Taxon OID: 7000000232
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052750 | Ga0030490
• Sample Name: Human stool microbial communities from NIH, USA - visit 1, subject 764285508
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 151031646
• Sequencing Scaffolds: 11
• Novel Protein Genes: 11
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	9
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043945	Metagenome	155	N
F051935	Metagenome	143	N
F058154	Metagenome	135	N
F070133	Metagenome	123	N
F076190	Metagenome	118	Y
F087213	Metagenome	110	N
F091068	Metagenome	108	N
F097172	Metagenome / Metatranscriptome	104	Y
F097493	Metagenome	104	Y
F101193	Metagenome	102	N
F102166	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2557102	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	639
C2601518	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	907
C2611997	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1017
C2649708	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2048
C2654840	All Organisms → Viruses → Predicted Viral	2462
SRS015578_WUGC_scaffold_10700	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1963
SRS015578_WUGC_scaffold_22898	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2212
SRS015578_WUGC_scaffold_28703	All Organisms → cellular organisms → Bacteria	805
SRS015578_WUGC_scaffold_40939	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1238
SRS015578_WUGC_scaffold_42448	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	921
SRS015578_WUGC_scaffold_43101	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	16488

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2557102	C2557102__gene_200866	F101193	MARKCTEYHYFQHTYWDVMARYNWMRCPYCGKLCKPSRFKAATVLVPIELVIFVVCIFFRNSMNDAIGWFAAWLLFVLLLFLPHYIYVR
C2601518	C2601518__gene_219309	F043945	SRYRTDVTSALPFEDELFFISGSQLLRVDDPEYEPEVVCNLEDIIWSEALKQSGYYGQVMLLNGGAELVLFSANEGRLYSFVPPTDDTMVRMQMVTELDYSTVPQMGWKKFPIAKDLYDVTVEQAVYDAQYGLYVIAKDKTDEYQIVRFDVDTGKGEMMEFALEDEEDSHLLTDMPGIFQWSGTSSKYERTLYDGKVLTTVDLSSGEATKAVHNWVNTLTLQPIPDYDVTLGDYVTHDAYYAYAPNKDNSAMYFVHDNTVWVMDYDEETSEFGEPHGIDKLPFFAEDTMCGFYWRGFYLI
C2611997	C2611997__gene_223726	F087213	MKKFSSVLLAVLLIFSCWTVATAESTDAVSGAPLDNDIEIVYKEHFDDMVTRYADELTEAELLVSADVYDAIGMIRFDSEDSLAARQRIYGIASADDLHAILTGYFDPNDAAYTADASLDARLQAILAACGLNPEDYDISVIRNLSGMPEPITGTNWYCTLIRKGVEVA
C2649708	C2649708__gene_239333	F091068	QDEQPLTADEEKLADAAFARAMAKIDRKAKQQKRRTVLHMLDRVVRVAACLIVAVGIAFPIALANSEAFREQILQLVLSINPETGMAHVGMKPAKEEQTANVPRMDVPDGWEGLFFPTFLPDSLPLVRCETTRGDQVHSEAYYADETRSLRFEEQDNLDGWNVRAADARVLTIYLHSVPGYLIDRQTEDTHEVSIIWAEGKRMLRVTSIGLPADEAVLVAQSVKKIFAE
C2654840	C2654840__gene_241478	F097493	MYKFHMKNGTAYFYEHGVEIDGTVYGIHTDRDILRIKRRIVNDKFAETDDNFDMGVEIAKIQHTDITFEQPTSEQLSQIQAKTYNSMTELKQHVQSIMNGELTQDEINAMLLLRIAEMEVAITNEQTTN
SRS015578_WUGC_scaffold_10700	SRS015578_WUGC_scaffold_10700__gene_18568	F102166	MEETWRISPEMRAFLMKKLFSLLLVLALALVPTLSLADDDAACQNLYNMLLDELKSVDLEMTADEESYRIYLGSALDKNSLGDADVIFDAYSDAVTINVSYSNPLDEALVPQVISFFNRVNSTLYVGKLMVIKSDNVWYAAYEIFLSVDPENITDWDRNNVLAYTALALDTMEEMVDYITEIANGESADNVFAMWQADIGAV
SRS015578_WUGC_scaffold_22898	SRS015578_WUGC_scaffold_22898__gene_41914	F070133	MMVMMGGMAGAQASTDNVSMQLIRMNPLAFRKEPVELYSVTHTPNGSFVVIYFAEGEKTELQEMWMELFDSVGTSLLSAKLGEFDPNGEKIPHGQIILKKDRFICEYYPDITSMEVCTQTVYRYTGKRIQKPTTKKLKFGAAPYAQHVGDYMVEKQAHSEDETPFRTVKITHIASGKSKKLRIYDWSFCAFPDQDGNLLIAQQNEKGNLEIRSYNAAMQESIVELSGDFLQNSYISDAACIGQTVYFDIYLTNQQSEILFYDMKQQNITDSQTLHTANDNSYIAEIKAAGAVLLSVDGYWNRELQRQKYQINLLNEHFETSRLPLQHESCLYIFTDVEQADVTTIEMDEKSHSYFVCSYSISAGE
SRS015578_WUGC_scaffold_28703	SRS015578_WUGC_scaffold_28703__gene_53839	F076190	VFTAASRVLGRVWSLVRITVPNDLKFVRIRVEKPQNNSLYPYFQREPL
SRS015578_WUGC_scaffold_40939	SRS015578_WUGC_scaffold_40939__gene_80772	F051935	ALADGTSPIVSDGLTELKSKRLIQIVEDEIGEGWTLYQPNGREYEENFSSLVNLREMHFLPVVAWKGNQLRLLILRRQGDLWKVSEQNDCALMRYGWTLHNFSAMGYGNSDWADIYFYFLDENQKEWELALHLSDTNVSYFDMIYVPEKYGTIIVFYYDCELKFLFDAPFYFQLNYDIKPAESYSFDVKDFDLATCPLSMQEFLVPAVVTCGEEGAGLYIMVQQDIQPILTLVDGTAIEAIPQKWERDWTIVYYQGNYLFMKTEYVTFSE
SRS015578_WUGC_scaffold_42448	SRS015578_WUGC_scaffold_42448__gene_84230	F058154	TAVVTYLLQDVPKMLVGRHFGWKLVRYEAFGRVYQADGTGAFVRVPVPAQSRLRYQPYLLPPEDAPRHDVTLYTLCPLLYGGALAVVFGVLTLLTLGQPVSLVLCELAMGGVVLVMTCILPMDERFIASPMAIARMLRDPEQLAEWLYFARMKANGGVEVTDVSIENIPQPATVKTCQDAICVFQRAQIALMVQCDAQKAYGLMKQVLESEARLSYTAWKLLLSDGVVAELLAGEPGEFTALYRGKAGAAIRQVMFRMVDYALPAYAVAMLVTHEAREAEVVRNTLAPVREKMPELDALMKAIEEKA
SRS015578_WUGC_scaffold_43101	SRS015578_WUGC_scaffold_43101__gene_85878	F097172	MKKNVFKKLMCAVLATACVATAVVPAMADDVVTAEAATKKVTSAYKYHIDGYDKKGYPIDGFSKTSFYKDLNSLPSVKTGKTTINVPAVTSSVKSVSKEKGEPCYESYVKFKAPKTGKYVVTLDNLQGTDDKSLKSLSCSLCEIAKTGKKYTLSGFEPDCNTVGKYDTLCENNYLARLRTILDNYKEEHPEYADVIEETYEYQKDLVNKYPVDKIKFTTQLKKGQTYVFVIDNRGMDKAVPPYFTTHGSDEQSCLWGGNYLKAYSFDMNIEYKK