7000000222: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 861967750

Overview

Basic Information

• IMG/M Taxon OID: 7000000222
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052734 | Ga0031294
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 861967750
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 110524758
• Sequencing Scaffolds: 17
• Novel Protein Genes: 19
• Associated Families: 18

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	2
All Organisms → cellular organisms → Bacteria	2
All Organisms → Viruses → Predicted Viral	1
All Organisms → Viruses	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2
Not Available	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Catonella → Catonella massiliensis	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030786	Metagenome	184	N
F036281	Metagenome	170	N
F042387	Metagenome	158	N
F043990	Metagenome	155	N
F051214	Metagenome	144	N
F061925	Metagenome	131	N
F066860	Metagenome	126	N
F067846	Metagenome	125	Y
F068942	Metagenome	124	N
F073671	Metagenome	120	N
F074985	Metagenome	119	N
F076191	Metagenome	118	N
F078842	Metagenome	116	N
F081454	Metagenome	114	N
F090516	Metagenome	108	N
F092230	Metagenome	107	N
F094007	Metagenome	106	N
F097490	Metagenome	104	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2664693	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	582
C2742151	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	2351
C2748417	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	4084
C2751843	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	8353
SRS057539_LANL_scaffold_14922	All Organisms → cellular organisms → Bacteria	2715
SRS057539_LANL_scaffold_17956	All Organisms → Viruses → Predicted Viral	1629
SRS057539_LANL_scaffold_23351	All Organisms → Viruses	41991
SRS057539_LANL_scaffold_2651	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	549
SRS057539_LANL_scaffold_31026	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	771
SRS057539_LANL_scaffold_31285	Not Available	785
SRS057539_LANL_scaffold_52921	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1597
SRS057539_LANL_scaffold_5293	All Organisms → cellular organisms → Bacteria	29708
SRS057539_LANL_scaffold_57228	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	15477
SRS057539_LANL_scaffold_63484	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Catonella → Catonella massiliensis	11948
SRS057539_LANL_scaffold_63953	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum	4067
SRS057539_LANL_scaffold_64573	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum	5430
SRS057539_LANL_scaffold_9926	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	778

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2664693	C2664693__gene_143747	F097490	LLCIISCSERKEIEVYNMELDENKKEVLVEIRNNTENNYYLLSPIVSIMTKHLQDIEGEMIEGQIHRKKLDSIVCSVCIWDDICKEEYYAMRDIVLLPKKSVKKIKYKYDNEEYIEIETVHIGFPYNGYYNEIGKKMQFMLKKKLDSSNIIKGYEFYNKDIETMTIKM
C2742151	C2742151__gene_175699	F061925	MSWEYSINLDSEESVSSVVTDLKICELFSSSTMDYIDWKNPKSINSTPYDARFYTDKKKTIYIAINSFSKNIFSALKSILAKQNYHLTDCDTDEEVTLEHIFRSVI
C2748417	C2748417__gene_179811	F042387	MKRIILFFMTGLFLVSCSRENDKMTDETLANSAKMQLPTKVTIAENKKVISKRFEYQNDNELKEIIDEGSGERIVFVYEKDFITSKIRYSQAGEELGKANYQYNNGKLSSVIDEVVISDSGIQYKRVVTREYHYNGSEVSVNENIKYHSESYAYNLRDENFTHTYVLNGENITKIHHEISKNVPGGHFYLNPNNMVVVDEEVTYDAKNSPYKNIKGFSVLAVEFCGLDEDENTIADYLNFRWVSHNPALIQKSTNLYGSGADSSEYKFQYEYKNNFPIKTKLNINNQTVIMMVYEYNK
C2751843	C2751843__gene_183786	F030786	MLVVMIVTSSLQLLLKNGSATKGGNAMGTKKASKISFADITDGDKAKVVAIKVKYFDDDEADKIFENNNNRILNTINSQHISFNYQSAEYSKPQLFLLYQSLKVDC
SRS057539_LANL_scaffold_14922	SRS057539_LANL_scaffold_14922__gene_18825	F078842	MIVSSIYKTADNDGLIAHIYEHLLAQYVLKCLQDNELFVLSDIILSAKTYGDTCFMDAELYSPEAKKTYDEALREFDKLVIPEDDILRAAGECGIEMNLNIVEVDRSELSKKLREVQLSPWRKQIDMAYRKAHDESSVNTLFRTSYIKYSKESDDLFRECVLEYSIDESHIQTPVDQALAAIVMQIVALNFLTVVREKYTVYDRGDQWSEASISVGYRMFLGLLKKDDKIINQLSYDFLEYIKILSSPVFCDNLQKALVRCSDNHKQVILSRSTLNAILGGCIIGGKGWLEMADSARIGQMVNSIELDIYEVNS
SRS057539_LANL_scaffold_17956	SRS057539_LANL_scaffold_17956__gene_22519	F074985	MELTDGGWYKTPRIIKGTDFLAHIHDTYASGNAMYVEFKASEGEVRILEYRRIYDVDTESAVLFTINTYPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRFSVSNFEELYIDQTFRRLTPVIFRHFDHSWIVMGLELSDSEEAEWFIYLKRQNGEGMTRVHFTKDQKFIYNPISGSWSLDDPTQEIKDLEEIKQTLRADAILDVTVSGVPMKLIRVQEIAKGILFFVFQDEEKNKRYYYNRPAIKLRIVTDPTTGEQKYLLDHIKAMHID
SRS057539_LANL_scaffold_17956	SRS057539_LANL_scaffold_17956__gene_22520	F036281	MISLIKVDEGPVDIYELRMQYLAKLKETDGVMLPTFIYRNKDLFITEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEDRKTYNAKEYYDYWAAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAEREIGHWYTFRMSDDQKSRFTRHTMTNEKGHQSYDWVLENVEWAADTIRYF
SRS057539_LANL_scaffold_23351	SRS057539_LANL_scaffold_23351__gene_29452	F073671	MNKEQAEHELAELHEKERSLEKALELVREKIRELVNYTDKNKGQK
SRS057539_LANL_scaffold_23351	SRS057539_LANL_scaffold_23351__gene_29457	F067846	MSIIAEWERKTFNDWDKQCSKEDDYNRAVEMEIEAIKENIANCDDDVICVFREKMLDYDDVINTFDDDTFNDDEFIKAVALGTDYEEMRIKILTAMAEDRLEQLEEDYRKGYILND
SRS057539_LANL_scaffold_2651	SRS057539_LANL_scaffold_2651__gene_3127	F094007	YLWILWYNSYYMKSKTVEVLELARPNRAGVIDVVDSDGNVVPLDYLGEDFVPDANSYSDEDFTKRNRIIVEMCDLFGRIRRRAGFAERHRGRGDYDRARRIERNRGSDISEVGRLAISACEACPLKLDCELYGKLGGAVLSDVLDYKKVRTATSLTKAGKRRSGWNKGCIDNNA
SRS057539_LANL_scaffold_31026	SRS057539_LANL_scaffold_31026__gene_39354	F066860	MTTKKQKLQKQQAIDTWIVIALWVSAIWFSLARGFITGIGGWILALLGPWALIVSCICLAIISRQMKKRHASKDHLTTIVRVSFIVMSISLFICGLAMPDFSDMETFSTLSVYTNNAISFETSKTIAIISGFVVVLSLFVAVTFGIAEDKE
SRS057539_LANL_scaffold_31285	SRS057539_LANL_scaffold_31285__gene_39676	F068942	MIRKILSLPTLALCFTLCTALFAGCNEDYIEDTETKVRWSNVKPPQYGDPINITLKAEGETFTTVGDYPWISFRSYASTLDTFTRHSFSEADKDTAYYKDIVIYLTRNKREQTATLKLVAPPNRTQQPKQFDFSIGVTPLGTYIFKVRQPALPAKAQ
SRS057539_LANL_scaffold_52921	SRS057539_LANL_scaffold_52921__gene_69106	F051214	MPGKIVAHDTHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYICNNREYQIACEFLRQIMHDKIDLKDEWI
SRS057539_LANL_scaffold_5293	SRS057539_LANL_scaffold_5293__gene_6435	F076191	MKIIAENPAEEALLWRIKALSDELVNQDNRSTNMPMWTILDNNKAGKDYGAVMYFTGKAAEQHIKENDHHYDNPMISVRSAHDNRELKDIVHLLILAGGNEIPSNHYGVLRDA
SRS057539_LANL_scaffold_57228	SRS057539_LANL_scaffold_57228__gene_76056	F043990	MIKKLGIIFTIGVIILGIVVYAGHKIEKSWIEGEFGVNMSNMNIDEKYRKEEWAPNGDGEKVIVLTYDQLDNSFTKLNKLPIKEDLPPNGIPKQFLNITNGYYKYVVDENDDRNFDILIVDTTRKEICIYYQIL
SRS057539_LANL_scaffold_63484	SRS057539_LANL_scaffold_63484__gene_89401	F092230	MRQAHKRMVDKLKTHLLKVFLPLFIVCIILVAFFRQIGCGSDGDYAFQISEWGAKLKNIYGTDFINKEIIVRDNAVRVDGIRCLYAVNQNEDGLSIYLLLPGGDYLTHNYVGSSFVRFSNSSEYINMAYGEGSVEVSDSTSTGEAQNTEEKEARDKVDEAINSMRHLFASAIMVNLRVVELYKILTVCMILIVIAMTIGYYSYLKPETVYEFYCKLRRKEKYPSDVNLVKRIGFLVIILPPCMLFLLIV
SRS057539_LANL_scaffold_63953	SRS057539_LANL_scaffold_63953__gene_90998	F090516	MKSNLSLKLFLAFERYFIENDEVISLDKSSEFTDVIVGIGFLPQDMSENTDFKKKTIEKYGFSSSTALADDFRKRVLNIDEPIPENFEKDGIGYVYTVISGYDTFYNRMYMFGIHCFNGGFNVTYYDLDNDAGTGDYYEEHELYSQAKGYRWLDPESDYYEDVLAWEALNKLATDIYFHLEDKLDVKIDIKPIPEEEKVVPTQEHLAKFLAFCGVEQDVIDENKERLLKALEEYTPDEYEGVSEAMAEMMEYSHKIQRAEPVIEIIREYGVCRFSDWKFYAEELEEYILDLADFSDWKWEYPADTYSADLFPYMRKQLSLYHLWLCHLDEGADAYLFLLFSEKDMPEIMKLARILDLPLKAYFK
SRS057539_LANL_scaffold_64573	SRS057539_LANL_scaffold_64573__gene_93866	F081454	MKTFKLVLLLFITSASLVFGQEKRYFFKHEFQPNSKYLIKYKTDMDGEYKFVGSKEVIDKIGMDGVKMTINSDIESAISTQKKQGNNVPFILEYTKYFYKAEINGETVNRKIPLQGVKLIGDIVNGKKMEVKNVEGNIDENTKKILIESIKQFSAIDTDFPKEGLKIGDSFDVVVPYKQSTQMGDIEMKMNIKYTLLKVEKEEAYFDMLVDFVMGDKNVKNMDLSASGDGKGFLLFDMKNNYFTSQNIDMTINLKLKTELLTLENTSKAKSVITQQKIK
SRS057539_LANL_scaffold_9926	SRS057539_LANL_scaffold_9926__gene_12467	F068942	LFAGCGENNLGFVTEVRWSNVKNPKYGDDINITLKAEGETFTTVGDHSQIFFGYDASTLDTFTRHRFPEMDKDTAYYKDIVIYLTRNESKGTATLKLVAPPNRTQQPKHFKFSVWVNPPATYFFNVRQPALPAKAQ