7000000221: Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 763820215

Overview

Basic Information

• IMG/M Taxon OID: 7000000221
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052733 | Ga0028009
• Sample Name: Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 763820215
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 21393023
• Sequencing Scaffolds: 5
• Novel Protein Genes: 11
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas somerae	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria → Neisseria sicca	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F027205	Metagenome	195	N
F036281	Metagenome	170	N
F040149	Metagenome	162	N
F047508	Metagenome	149	N
F067847	Metagenome	125	N
F071329	Metagenome	122	N
F074985	Metagenome	119	N
F081456	Metagenome	114	N
F081510	Metagenome	114	N
F084342	Metagenome	112	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C1247766	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas somerae	520
C1255925	All Organisms → cellular organisms → Bacteria	680
C1266477	All Organisms → Viruses → Predicted Viral	2443
SRS043676_WUGC_scaffold_19400	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria → Neisseria sicca	622
SRS043676_WUGC_scaffold_8888	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	44133

Sequences

Scaffold ID	Protein ID	Family	Sequence
C1247766	C1247766__gene_35398	F084342	GQCGAKLFLLGGYLAIPIRRPFFAKALKETLGQERGLGDAYDKDYQNEKALQWIHRRHILGICKEE
C1255925	C1255925__gene_38410	F040149	VADEGAEKLWWEVLIKEQGIPVLFVEVVAWYDGRVSSSEILRSVGIALEREPRLAPVWSHDSEDAIDYFIYDISVPEGHTLTAVRERETVVAQLLNIHRYVYYP
C1266477	C1266477__gene_42519	F081510	MKLPDMKAVKAAAKTTYTTSKILTKKYAPFILLGVGLVGYGYSVYEGVKSGKKLEKTKAKYEELDQANIPYSKKEVVMDIAKDVAVPVAVATASTAAIVLGFAIQTNRLKAVSAALAMATEEHARYRLRAKTVLDEETFKKIDAPMETKSVEVDGKEIEVESVVPNEGDFYGRWFKYSSNYAADDPEYNEAWVREVDNMLTARMAKAGMLTFAEVLDALGFEVPKAALPFGWTDTDGFYIEWDTHEVWNDDKQELEPQLYVRWKTPRNLYATTNFKDLMPKKTRKELN
SRS043676_WUGC_scaffold_19400	SRS043676_WUGC_scaffold_19400__gene_18652	F047508	GHRLVEGCVKYPYLRRIGEYLRHSFDTEDVGWVVKRSKLCALMEHIYYLWGDTYALSKALCTVYEAVTDGVDLIEGLYEVLFFENVEDNLYAACVVRNVKVALDLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQRGAATVEDQDFHKVLYYMVRCELILSSP
SRS043676_WUGC_scaffold_8888	SRS043676_WUGC_scaffold_8888__gene_7187	F074985	MMELTDGGWYKTPRIIKGKDFLAHIHDTYASGNAMYVEFKASEGEVRILEYRRLYDVDTESAVLFTINTYPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRINLEQFDQIWLDQTFQKLHPVIVNHDGKFWHVMGLKLDVDADGSFWGLYLKRQDSDFMKEIRMPLTQKFIYNPISGSWSLDDPTQEIKDLEEIKQALRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDPTTGEQKYLLDHIKAMHID
SRS043676_WUGC_scaffold_8888	SRS043676_WUGC_scaffold_8888__gene_7188	F036281	MITLIKVDEGPVDIYELRMQYLAKLKQTDGVMLPTFIYRNKDLFITEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWAAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAEREHGHWYTFRMSDDQKSKFTRHTMTNEKGHQSYDWVLENVEWAADTIRYF
SRS043676_WUGC_scaffold_8888	SRS043676_WUGC_scaffold_8888__gene_7189	F027205	MRAVKESEEFERKALVEAQKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEQDLFAFMDYLLDEYDIPRRIKRSTK
SRS043676_WUGC_scaffold_8888	SRS043676_WUGC_scaffold_8888__gene_7194	F071329	MLPVAKIIISGLSSIGAGMIASKLTKPLVSNANGIAKILLWFGSVGTGIAASAIVAREVELQFDETVKAVKEARDHVEIED
SRS043676_WUGC_scaffold_8888	SRS043676_WUGC_scaffold_8888__gene_7195	F018385	MMAEYVNQWESYKELSIENDRDPVLDDPIIYGVNVKHFTLTVYSPEGRVSKYWNARILQDQLGRCRIACPRDGKILCFAWFEWTSYMFSHDGLNELVFMPRTNSRLPSTLWNTKEVK
SRS043676_WUGC_scaffold_8888	SRS043676_WUGC_scaffold_8888__gene_7202	F067847	MFSHIIRVRGIFDDEPTTKKLYFHMSRREMFDFIKRYDNVTNFEKWLQAAIDNEDLYAMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPSLVREFYNGILPEKIMKQVQQDPKYKELDSKLKETELNNL
SRS043676_WUGC_scaffold_8888	SRS043676_WUGC_scaffold_8888__gene_7206	F081456	MFEEPPIYYILISLIFLIVFGAISFATWMVWLTSIAFFAKLVVTAIGFLLCAMTVILYTISAD