7000000194: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 158337416

Overview

Basic Information

• IMG/M Taxon OID: 7000000194
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052699 | Ga0031301
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 158337416
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 117758500
• Sequencing Scaffolds: 29
• Novel Protein Genes: 31
• Associated Families: 30

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	3
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Pseudoprevotella → Pseudoprevotella muciniphila	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria	6
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	6
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
Not Available	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Veillonella	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027205	Metagenome	195	N
F030786	Metagenome	184	N
F033081	Metagenome	178	Y
F040685	Metagenome	161	N
F041827	Metagenome	159	Y
F042387	Metagenome	158	N
F043235	Metagenome	156	N
F043990	Metagenome	155	N
F045567	Metagenome	152	N
F051211	Metagenome	144	N
F051212	Metagenome	144	N
F053092	Metagenome	141	N
F054109	Metagenome	140	N
F054110	Metagenome	140	N
F054111	Metagenome	140	N
F057446	Metagenome	136	N
F061925	Metagenome	131	N
F061926	Metagenome	131	N
F061927	Metagenome	131	N
F064819	Metagenome	128	N
F066860	Metagenome	126	N
F068942	Metagenome	124	N
F076191	Metagenome	118	N
F080165	Metagenome	115	N
F084342	Metagenome	112	N
F084362	Metagenome	112	N
F090516	Metagenome	108	N
F095633	Metagenome	105	N
F097490	Metagenome	104	N
F103433	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2502387	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	605
C2503227	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	609
C2521644	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Pseudoprevotella → Pseudoprevotella muciniphila	723
C2533665	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	833
C2544769	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	981
C2552848	All Organisms → Viruses → Predicted Viral	1143
C2566766	All Organisms → cellular organisms → Bacteria	1701
C2571085	All Organisms → Viruses → Predicted Viral	2046
C2585699	All Organisms → cellular organisms → Bacteria	12869
C2585973	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	15350
SRS022077_Baylor_scaffold_18595	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	857
SRS022077_Baylor_scaffold_25253	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1515
SRS022077_Baylor_scaffold_26043	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	24925
SRS022077_Baylor_scaffold_26243	All Organisms → cellular organisms → Bacteria	4590
SRS022077_Baylor_scaffold_26306	All Organisms → cellular organisms → Bacteria → Proteobacteria	13809
SRS022077_Baylor_scaffold_29257	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	13219
SRS022077_Baylor_scaffold_31248	Not Available	9221
SRS022077_Baylor_scaffold_33921	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1489
SRS022077_Baylor_scaffold_44126	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	10733
SRS022077_Baylor_scaffold_46639	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	538
SRS022077_Baylor_scaffold_47657	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	49329
SRS022077_Baylor_scaffold_50931	All Organisms → cellular organisms → Bacteria	4547
SRS022077_Baylor_scaffold_52017	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum	6586
SRS022077_Baylor_scaffold_52670	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	49747
SRS022077_Baylor_scaffold_56132	All Organisms → cellular organisms → Bacteria	7292
SRS022077_Baylor_scaffold_56407	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	989
SRS022077_Baylor_scaffold_56510	All Organisms → cellular organisms → Bacteria	20403
SRS022077_Baylor_scaffold_57483	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	47626
SRS022077_Baylor_scaffold_57739	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Veillonella	41323

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2502387	C2502387__gene_146179	F045567	GGITPLLYRAEGEARRPWVGMVTEDVVHTSTHRVEDALLPVDGDILTPRDGTHIVQAERVVVVLVSQEDSIDTIDTETCGLVVEVRATVDEDTLPTLGDDEGRGAQTTVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKEIPSLSSERGCVVERVVR
C2503227	C2503227__gene_146501	F066860	MTTKKQKLQKQQAIDTWIVIALWVSAIWFSLARGFITGIGGWVLALLGPWALIVSCICLAIISRQMKKRHVSKDHLTTIVRVSFIVMSISLFICGLAMPDFSDMETFSTLSVYTNNAISFETSKTIAIISGFVVVLSLFVAVTFGIAEDRE
C2521644	C2521644__gene_153582	F068942	MIRKILSLPTLALCFTLGSALFAGCNEDYIKDTKVRWSNVKNPEYGDPINITLKAEGETFTTMGDYPWISFRSYASTLDTFTSHSFSEADKDTAYYKDIVIYLTRNKRERTTTLKLVAPPNRTQQPKQFDFSIGVTPLGTYI
C2533665	C2533665__gene_158325	F033081	MAWLLRRVMPQDPRPVFVWPRLVAAIGNVGYFSRRGFSVLAVGLIIVTIATIKILLFVPGLNQSVVSLLTRGLETFLPTGWATIAAWVVGTTGVFLIGSFTSSYTPSQRLLYSLEATGCGVYDALLLLALIEEQAFRSGSEKWSWHGRARASVCFGLIHVTNIWYSFAAGIALSATGFGFLLVYLWYYRKYRNQIVATAAAATVHTLYNVIALSLIVVAAAIILVIDIAKMM
C2544769	C2544769__gene_162727	F041827	LENNETPAPAPQKEKLVLLKQLSEGSTVTFQYKNGNEIESVNIDGVGKSDIDYEYDTYGRIVKERRFHRRYDRGETNITYQYDNQGRLVSSHAISTKFYPGTGLTPRCSVEKKHTYTYQGNKVIVKIEMGADTCSAIPETGKEKTITLLVENGRVTKTFDEQGNIEQTIEYYNTKNALRNIKGFPALVVEFYIRPLTYELPYYNLGIERIEDLRYIDNIKTRDFHDGDYWEYRYSYDKENTYNGDYPNGVRIHARSHNDPTYDEYLYEISADRSYIKEE
C2552848	C2552848__gene_166150	F054109	MIKERINMTGRPKSKKGVKVHTAFKIYPKDKERAQVMADKLDMSLSAYINKAVLERLAHDEKSEA
C2566766	C2566766__gene_172750	F054111	MNKSLESITHEEFLKLMERLKNLQEFTFLEYIIAPEADIFYFNFMEKTVKIKWDLDYGLFLETEALSTADRDLFLNILDKEILFLI
C2571085	C2571085__gene_175126	F027205	RLIVSADDILKAVKESEEFERKALSEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYILDEYDIPKRIRKRAENERD
C2585699	C2585699__gene_188349	F030786	MKRTKIHNVVFQMLVVMIVTGSLQLLLKNGSAAKGGNATGAKKISLADITGGDDSETGVLKVKYFDDEGADKIFENNNNRILNTINSQHISYNSQSAEYSKPQLFLLYQSLKVDC
C2585973	C2585973__gene_189005	F057446	MNSISFGKTIITSYPEYFEITDNKKTSKLLYLSASFVFIAIYLFDLYQNDFDFGKVAHFKTISAVLWLVIFALQFWLINTESKIEKSKIKEIVVRKNRWASIVIHYGDKKRKIDGFSQDEAEQIIKFLMNNR
SRS022077_Baylor_scaffold_18595	SRS022077_Baylor_scaffold_18595__gene_22945	F095633	MGNYKNSAEVWRREGLTEDELRTMGILAMEATEKLKKTIIRKETVLLGSVPFGSWDEFAKAVQEMAAHSYEPIPVEINTKRLIVTAFLDDEGEMSVEERFVPEEVFIDLSRTRCDAEEDRNHKSYEFTCPALMEHPDGKLYLTRKAYVISVIDVNGSQEVDFNIIYGGLN
SRS022077_Baylor_scaffold_25253	SRS022077_Baylor_scaffold_25253__gene_31954	F053092	MQSDQGLILCLTHALLVLGALILEPAEMEDPMDDHTVQLFGILIAKELGIATHRIKADEHVPRDHIPLTLVEGDDIGIVVMIEEVLIGLQDALITTELVAELADTTVIASSDLTDPVAKDTLSEARLLDVFVSIVSYKLRFFRHK
SRS022077_Baylor_scaffold_26043	SRS022077_Baylor_scaffold_26043__gene_33090	F042387	MKRIILFFMAGLFLVSCSRENDKMTDETLANSAKMQLPTKVTIAENKKVISKRFEYQNDNELKEIIDEGSGERIVFVYEKDFITSKIRYSQAGEELGKANYQYNNGKLSSVIDEVVISDSGIQYKRVVTREYHYNGSEVSVNENIKYHSESYAYNLRDENFTHTYVLNGENITKIHHEISKNVPGGHFYLNPNNMVVVDEEVTYDAKNSPYKNIKGFSVLAVEFCGLDEDENTIADYLNFRWVSHNPALIQKSTNLYGSGADSSEYKFQYEYKNNFPIKTKLNINNQTVIMMVYEYNK
SRS022077_Baylor_scaffold_26243	SRS022077_Baylor_scaffold_26243__gene_33345	F084362	MSLMNCTFTVRWSDEKNEPHAKTYATEDDAKRAKKWLLEHGVRSVDIAVKINNKPAGRLQDSEKQAEAAAEQKGFWWQE
SRS022077_Baylor_scaffold_26306	SRS022077_Baylor_scaffold_26306__gene_33432	F103433	MKEWSKNKPGVVFFFVVWFILSISFIGNFFGTGLWNGWFDGFQKDSSAIVEKTAYCKNKYDYKGPLIAADSKDYNKIMMSQDCNPSQVKPYVSQYGLQARVIAGLSPNDASKIPAYIKRVSIFLAVLTAFLLALVVQKIRALFGGITASVFAVMLAFSPWIAGYARNIYWIEPMLIAPFVISFVSYQYFKKSKKLWLFYIIESVAMFLKLLNGYEYVSTIAISVLVPIIFFELVHKNVKIINLWKQAVPVFAATVVAFFGAYWVNFVSLTDYYGSSDKAANAINARASDRGISGIRSMRAYAVGNFKILRPESYNFINQLVNLDNMANNSGKTYKYIIVNVVNYLLLPAITLPVHINGMFGEFVQSILFWTILGYLIILSSRKIIGKKYSRPFLWSMNFSVIGAFCWLALMPGHALPHAHINGIIFYIPLLLFVYVLIGLWADYVVKRTVKYE
SRS022077_Baylor_scaffold_29257	SRS022077_Baylor_scaffold_29257__gene_37473	F061927	MKNPIFILSAMFILGACSSESAKKAYNDSFRKTFIEEGVKSCIENSGLKENEAREYCECAMNKLNENLSNDEIIDISMDNPPKDLDERIDKAISSCIGE
SRS022077_Baylor_scaffold_31248	SRS022077_Baylor_scaffold_31248__gene_40262	F076191	MKIIAENPAEEVLLWRIKALSDELVNQDNRYTRMPVWTILDNNKAGKDYGAVMYFTGKAAEQHIEENGHHYDNPTICVRSAHDNRELKDIVHLLILAGGNEIPSNHYGVLRDV
SRS022077_Baylor_scaffold_33921	SRS022077_Baylor_scaffold_33921__gene_44120	F043235	VDEFGTQLTDALLDRPDRSKRELHQWAVNGDDIVQLRHMDEVIPSDEGHLLIDLCDDDPRSLCGGLGIVTRYPEGAIALFIGLAHRDQCDIDRIDTIPKEVWEFMEVTREIVDTLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLLPGSAH
SRS022077_Baylor_scaffold_44126	SRS022077_Baylor_scaffold_44126__gene_58657	F061926	MIKTAKHIKTFLASVLLLIFVMNVSGLFVRLHHQETHQKTEKIAECSNKVCYHKAHLQTKSDCDCGFLCTLNYFYILPEKPLTEFHVNEYFSYFSSYKIFVSERIILLWQSRAPPVLS
SRS022077_Baylor_scaffold_46639	SRS022077_Baylor_scaffold_46639__gene_62458	F084342	VSAQCGAKLFLLGGYLAIPIRRPFFAQALKETLGQERGLGDAYDKDYQNEKALQWIHRRHILGICKEE
SRS022077_Baylor_scaffold_47657	SRS022077_Baylor_scaffold_47657__gene_64161	F097490	MNIFCKIILPLLCIISCSERKEIEVYNMELDENKKEVLVEIRNNTENNYYLLSPIVSIMTKHLQYIDGEMIEGQIHHKKLDSIVCSVYIWDDICKEEYYAMREIVLLPKKSVKKIKYKYDNEEYIEIVHIGFPYNGYYNEIGKKMQFMLKKKLDSSNIIKGYEFYNKDIETMTIKM
SRS022077_Baylor_scaffold_50931	SRS022077_Baylor_scaffold_50931__gene_69934	F051211	MRVKKAIKVFEKIRDLPYGTSGSDEVWSCYQKCVLLKQELQHIGITSQLLIGIFDWQDLQIPEHILKIRRQQYERHVILRVFIDEFAYDVDPSIDIGLTPMLPMACWDGKSSTTTMAPLRYLRVYRPHSLHERILSQLRRKIFRSNPESFYTAIDIWLATIRVS
SRS022077_Baylor_scaffold_52017	SRS022077_Baylor_scaffold_52017__gene_71910	F043990	MIKKLGIIFIFGVIILGIAVYANHKIESSAIEREFGVNMSNMNIDEKYRKEEWAPNGDGEKTIILTYDQLDSSFTKLNKLPIKEDLPPNGIPEQFLNIANGYYKYVVDENDDRSFDILIVDTTRKEICIYYQIL
SRS022077_Baylor_scaffold_52670	SRS022077_Baylor_scaffold_52670__gene_73167	F061925	MSWEYSINLDSEEAVSSVVTDLKICELFSSSTTDYIDWKNPKSIDNIPYDARFYTDKKKTIYIAINSFSKNIFSALKSILAKQNYHLTDCDTDEEVTLEHIFRSVI
SRS022077_Baylor_scaffold_56132	SRS022077_Baylor_scaffold_56132__gene_81875	F064819	MILKDNQGKDRIKFSDIVRLNKEEPVFVKMKVRISTETMVSEENLDIERTDLEDLTRNLKDLCECKIRKFFFQNIDETIEIVFSINDIGTIAVEGKMYDESYMNSINFSFQTDLNGIAIFSKEISQEI
SRS022077_Baylor_scaffold_56407	SRS022077_Baylor_scaffold_56407__gene_82687	F033081	MAWLFRRAMPQDTRPTFVWSRLVTEIENAGYFSRRKSSILAVGLIIMTIAMIKMLLFVPGLNQSVVSLLTRGLETFLPTGWATATAWTVGMAGVFLMGNFTNYTPSQKFLHKIKATRYEVYNTLLLLALLEEQAFRSGSEKWNWRERVRASVCFGLLHITNIWYSFAAGIALSVTGFGFLLVYLWYYRKYCSQIIATAAAATVHALYNAIALSLIAVVLAIDIAKLL
SRS022077_Baylor_scaffold_56510	SRS022077_Baylor_scaffold_56510__gene_83103	F040685	MKKLLFKLFFALAFASISLHGQEKIQQVEVHIFGGMALYSSQYTLNSLKKEFSAKPLMGQKEELPKEISLPNTPKNWETFTKKINLDKFKKLRDGPSQQTFDGQDEVIIIKTDKKTYRKMNASGNDHDREVWYDLLQIIAKEFGKKSIYE
SRS022077_Baylor_scaffold_56510	SRS022077_Baylor_scaffold_56510__gene_83104	F051212	MKKFFFIFVLYWLHSFNGTEKAMTTSPDTQKTNISEKQNTEKIERIIYSETGGDTGGKNVHLVITKDSIIYRLTEGVTDERTIADLSLNNNNKDWEAFIDKIDLEDFEKGKPSEELIMDLPTIKIIIKTDKKEYSKTDIQANKTWDYITKQIIDIKYSQLYNHLNLEK
SRS022077_Baylor_scaffold_57483	SRS022077_Baylor_scaffold_57483__gene_88193	F080165	MKSIKILLLLLSLTACNNKTKTISTLDLEKTIINYKDLPSKVKERVFYGEAMKLGEEDEERFQDFQETNNPKKYEYYTKQNPQLAWVHYPYIRNKKTKQEYSIDKDGPMGSRYIIYGDSLYISNHYNIYEEDSLRYTFTRYILR
SRS022077_Baylor_scaffold_57483	SRS022077_Baylor_scaffold_57483__gene_88210	F090516	MKSNLSLKLFLAFERYFIENDEVISLDKSSEFTDVIVGIGFLPQDMSENTDFKKKTIEKYGFSSSTALADDFRKRVLNIDEPIPENFEKDGIGYVYTVISGYDTFYNRMYMFGIHCFNGDFNVTYFDLDNDAGTGDYYEEHELYSQAKGYRWLDPESDYYEDVLAWEALNKLATDIYFHLEDKLDVKIDIEPIPEEEKVVPTQEHLAKFLAFCGVEQDVIDENKERLLRALEEYTSDEYEGVSDAMAEMMEYSHKIQRAEPVIEIIREYGVCRFSDWKFYAEELEEYILDLADFSDWKWEYPEDTYSADLFPYMRKQLSLYHLWLCHLDEGADAYLFLLFSEKDMPEIMKLARILDLPLKAYFK
SRS022077_Baylor_scaffold_57739	SRS022077_Baylor_scaffold_57739__gene_90655	F054110	VLDVNYQPTIKKLLKALQMNGRRYVVDVRQLWSKYDKPCKVYIVNRMYTEEEYKLTFPHKYKKGKTFKQGQLYKKESEYSSTKQHEVLLFLVKTYKGGD