7000000180: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 159490532

Overview

Basic Information

• IMG/M Taxon OID: 7000000180
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052685 | Ga0027954
• Sample Name: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 159490532
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 25494081
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus	1
Not Available	1
All Organisms → Viruses	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → Viruses → Predicted Viral	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054109	Metagenome	140	N
F067846	Metagenome	125	Y
F073671	Metagenome	120	N
F081510	Metagenome	114	N
F105377	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
C1369258	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus	587
C1370132	Not Available	603
SRS017013_Baylor_scaffold_12107	All Organisms → Viruses	606
SRS017013_Baylor_scaffold_14023	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae	6042
SRS017013_Baylor_scaffold_23037	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae	898
SRS017013_Baylor_scaffold_23384	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	57110
SRS017013_Baylor_scaffold_23698	All Organisms → Viruses → Predicted Viral	3678

Sequences

Scaffold ID	Protein ID	Family	Sequence
C1369258	C1369258__gene_44993	F067846	MESLQAQWERKTFNDYDRRCCAEDAYNEAVEREIECIEEDISNGDSEELWKFSEKAFEDDDFVKAIALGTDYEEMRIKILTAMAEDRLEQLEKDYRNGYILND
C1370132	C1370132__gene_45309	F054109	MVGRPKTKRGMKVHAAFKIYPDDKARVQAMAEKLDISLSSYINKAVLEKVERDEKSED
SRS017013_Baylor_scaffold_12107	SRS017013_Baylor_scaffold_12107__gene_12200	F105377	VRDFDKLPLLTPEEAFERAWEEGGAARPVFDRGYQVRNLNDWKAIETLLRQNDVPDITIASFGLKRFEDILDALAMLHERGWRLWQTAANVYVGGERKTVQAIRAHYRGI
SRS017013_Baylor_scaffold_14023	SRS017013_Baylor_scaffold_14023__gene_14511	F067846	MESLQAQWERKTFNDHDRRCCAEDAYNEAVEREIECIEEDISNGDSEELCKFSEKAFEDDDFVKAIALGNDVEEMRICILKSLAEERIEQRRKDYEKGFILND
SRS017013_Baylor_scaffold_23037	SRS017013_Baylor_scaffold_23037__gene_27330	F073671	MNKEQAKHELAELHEKERSLEKALELVREKIRELVNCTDKNKV
SRS017013_Baylor_scaffold_23384	SRS017013_Baylor_scaffold_23384__gene_28053	F081510	MKLPKLPNMQTIKSTAKSAMVTTKILGKKYAPFVLLGVGLVGYGYSVYAGVKSGKKLEATKAKYEAKDAAGEEYTRMEVVKDVAKDVAIPVAVATASTAAIVLGFAIQTNRLKAVSSALAIVTEEHARYRLRAKEVLDEATFKKIDAPLETKTVELDGQEVEVESIVPNEGDFYGQWFKYSSNYVSDDPDYNESYIKEAETYLVNRMMKKGVLTFGEVLDKLGFDVPRAALPFGWTDTDDFYIEWDAHEVFDDVKQEYDLQFYVRWKTPRNLYATTSFKDFVPKKTRKELN
SRS017013_Baylor_scaffold_23698	SRS017013_Baylor_scaffold_23698__gene_28922	F073671	MEKEQAEHELAELHEQERSLEKALELVREKIRELVNYTNKNKG