7000000159: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 809635352

Overview

Basic Information

• IMG/M Taxon OID: 7000000159
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052655 | Ga0031347
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 809635352
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 81881421
• Sequencing Scaffolds: 8
• Novel Protein Genes: 9
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1
Not Available	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041827	Metagenome	159	Y
F043235	Metagenome	156	N
F045567	Metagenome	152	N
F047508	Metagenome	149	N
F055792	Metagenome	138	N
F061927	Metagenome	131	N
F067846	Metagenome	125	Y
F073671	Metagenome	120	N
F081454	Metagenome	114	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2588287	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	848
SRS063288_LANL_scaffold_17218	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1024
SRS063288_LANL_scaffold_25984	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis	2073
SRS063288_LANL_scaffold_49110	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	2011
SRS063288_LANL_scaffold_49999	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum	1046
SRS063288_LANL_scaffold_54910	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	2207
SRS063288_LANL_scaffold_61351	Not Available	1040
SRS063288_LANL_scaffold_63181	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae	4264

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2588287	C2588287__gene_141491	F081454	MKVFKLVLLLFITSVSLVFGQEKRYFFKYEFQPNSKYLIKYKTDMYGGYKFVGSKEVIDKIGMDGVKMTINSDIESAISTQKKQSNNVPFILEYTKYFYKAEINGETVNRKIPLQGVKLIGDIVNGKKMEVKNVEGNIDENTKKILIESIKQFSAIDTDFPKEGLKIGDSFDVVVPYKQSTQMGDIEMKMNIKYTLLKVEKEEAYFDMLVDFVMGDKNVKNMDLSASGDGKGFLLFDMKNNYFTSQNIDMTINLKLKTELLTLENT
SRS063288_LANL_scaffold_17218	SRS063288_LANL_scaffold_17218__gene_28537	F041827	LALGCLLLSCNRDNETNETPAPPQNEKLVLLKSASPGGIELNYKNRNEIESLSTDGMYGKSDINYEYDAYGRIIKERRFSHRYDYGETNITYQYDGQGRLTSSHAISTEFYPGTGLTPRCSVEKKHAYTYQGNKVIVKIEMGTDTCSAIPETGKEKTITLLVENGKVVKSLDENNQIIETIEYHNTKNALRNIKGFPALVVEFYIRPFTYELNWYNNIELAQDLRFIDNVKTRNYPNGNYIMYEYRTENYEITDKDYPYKVIALDKSSSDPTQQSLVYMNERNYIEEQ
SRS063288_LANL_scaffold_25984	SRS063288_LANL_scaffold_25984__gene_43461	F055792	SAVAHRILLLTTQLGESLLASLGAENGVIAEAMVTGALERDLAIDCALEEVRPVFVDESDDGTEAGTTWGRYPLETLQKEGNILFEGRMLPCEACGVDSRSSVKSLDLEPRIIGKAIEAVALPDVTCLDESIPLQGIGGLRDLLVTPDVSETDHLQTSREEGTNLLQLMGIIARKYQLFHTFVS
SRS063288_LANL_scaffold_49110	SRS063288_LANL_scaffold_49110__gene_82267	F043235	MDEVVPSDEGHLLIDLCDDDPRSLCGGLGIVTRYPEGAIALFIGLAHRDQCDIDRIDTIPKEVWEFMEVTREIVDTLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEDFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLLPGSAH
SRS063288_LANL_scaffold_49999	SRS063288_LANL_scaffold_49999__gene_83769	F061927	MKNPIFILSVILILGACSSESAKKAYNDSFRKTFIEEGVKSCIENSGLKESEAREYCECAMNKINENLSNDEIIDISMDNPPKDLDERID
SRS063288_LANL_scaffold_54910	SRS063288_LANL_scaffold_54910__gene_92332	F045567	MRQRDGRDTLTEELKGDITPLLYRAEGEARRPWVRMVTEDVVHTSTHRVEDALLPVDGDILTPRDGTHIVQTERVVVVLVSQEDSIDTIDTETCGLVVEVWATVNEDTLPTLGDDEGRGAQTTVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKETPSLSSERGCVVERVVR
SRS063288_LANL_scaffold_61351	SRS063288_LANL_scaffold_61351__gene_104995	F047508	PYLRRIWEYLRHSFDTEDVGWVVKRSKLCALMEHIYYLWGDTYALSKALCTVYEAVTNGIDLIEGLYEVLFFENVEDNLYAACVVRNVKVALDLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQRGAATVEDQDFHKVLYYMVRCELILSSP
SRS063288_LANL_scaffold_63181	SRS063288_LANL_scaffold_63181__gene_109841	F073671	MNKEQAEHELAELHEKERSLEKALELVREKIRELVNYTDKNKV
SRS063288_LANL_scaffold_63181	SRS063288_LANL_scaffold_63181__gene_109846	F067846	MESLQAQWERQEFNKWDKQCSKEDDYNRAIEMEIEAIKENISNCDDDVICVFREKMLDYDEVINAFDDDTFNDDEFIKAIALGTDYEEMRIKILTAMAEDRLEQLEKDYRKGFILND