7000000149: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 763435843

Overview

Basic Information

• IMG/M Taxon OID: 7000000149
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052645 | Ga0027926
• Sample Name: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 763435843
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 17827319
• Sequencing Scaffolds: 9
• Novel Protein Genes: 10
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	4
Not Available	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036281	Metagenome	170	N
F043235	Metagenome	156	N
F043991	Metagenome	155	N
F051214	Metagenome	144	N
F053092	Metagenome	141	N
F055792	Metagenome	138	N
F071329	Metagenome	122	N
F074985	Metagenome	119	N
F098763	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C914273	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	509
C927208	Not Available	888
C931780	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis	2030
SRS013881_WUGC_scaffold_10189	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	606
SRS013881_WUGC_scaffold_10525	All Organisms → cellular organisms → Bacteria	3323
SRS013881_WUGC_scaffold_11617	All Organisms → Viruses → Predicted Viral	1843
SRS013881_WUGC_scaffold_11954	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	793
SRS013881_WUGC_scaffold_6283	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	2195
SRS013881_WUGC_scaffold_7144	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	883

Sequences

Scaffold ID	Protein ID	Family	Sequence
C914273	C914273__gene_28621	F043991	MSKKNPSVIDYFDLNGDLNEEAYEFEDVKLEEYIDKRSNVKASWVGKYSHQMHFDLPDDTEVSFYKGLNIVYADINFAGGIRTILFKCRQKKNLTRFISRVLEIAQGDPSNVHPDFRA
C927208	C927208__gene_34291	F055792	MEIASQALDSTSAVAHRILLLTTQLGESLLASFGAEDGVIAEAMVTRALESNLSIDSTLEEVGPVLIDKGDDGAEAGTTWGRYTLETLQKEGYILFEGSMLPCEARRVDSRSSIKSLDLESRIIGKAMKPVALPHVARLDEGIPLQRIGGLRDLLVTPDVSQADDL
C931780	C931780__gene_36542	F053092	DDHTVQLFGILIAKELGIATHRIKADEHVPRDHIPLTLVEGDDIGIVVMIEKVLIGLQDALITTELVAELADTTVIASSDLTDPVAKDTLSEARLLDVFVSIVSYKLRFFRHK
SRS013881_WUGC_scaffold_10189	SRS013881_WUGC_scaffold_10189__gene_10413	F071329	LHLMCKSPRVCKRARGYASETKGNMRPLYSKGILMLPVAKTVITGLSSLGAGMIASSLLQPFYKNANGIQKIILWFGGYGLGVAAGSLVQREVGKQFDEVVAAVKEARDHIEIED
SRS013881_WUGC_scaffold_10525	SRS013881_WUGC_scaffold_10525__gene_10811	F043235	MDEVVPSDEGHLLIDLCDDDPRSLCSGLGIVTRYPEGAIALFIGLAHRDQCDIYRIDTIPKKVWEFMEVTREIVDSLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLLPGSAH
SRS013881_WUGC_scaffold_11617	SRS013881_WUGC_scaffold_11617__gene_12404	F036281	MITLIKVDEGPVDIYELRMQYLAKLKQTDGVMLPTFLYRNKDLFITEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWTAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAERETGHWYTFRMSDAQKSKFTRHAMTNEKGHQSYDWVLENVEWAADTIRYF
SRS013881_WUGC_scaffold_11617	SRS013881_WUGC_scaffold_11617__gene_12405	F074985	MTELTDGGWYKTPRIIKGKDFLAHIHDTYASGNAMYVEFKASEGEVRILEYRRLYDVDTESAVLFNINTCPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRINLEQFDEIFISDTFRKLRPVIVLHQEKFWHVMGLELNSYDGESCWYIYLKRQDSDFMTRIRMPLTQKFIYNPISGSWSLDDPTQEIKDLEEIKKTLRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDSETGEQKYTLDHIKAMHID
SRS013881_WUGC_scaffold_11954	SRS013881_WUGC_scaffold_11954__gene_12959	F071329	MLPVAKIIISGLTSIGAGMIASKLTKPLVSNANGIAKILLWFGSVGTGVAASAIVAREVELQFDATVKAVQEARDHVEIED
SRS013881_WUGC_scaffold_6283	SRS013881_WUGC_scaffold_6283__gene_5692	F098763	MDRRTSLRVLSTVLYFTTKLFKAVVRTTISYNPSDEVEGKGGMNAIPTAVDE
SRS013881_WUGC_scaffold_7144	SRS013881_WUGC_scaffold_7144__gene_6744	F051214	PGKIVAHDTHLRIDTEFIELKDCFDAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQVMHDKIDLKDEWIA