7000000139: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 159207311

Overview

Basic Information

• IMG/M Taxon OID: 7000000139
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052635 | Ga0031234
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 159207311
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 50436752
• Sequencing Scaffolds: 6
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1
Not Available	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	1
All Organisms → Viruses → Predicted Viral	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054110	Metagenome	140	N
F080166	Metagenome	115	N
F081455	Metagenome	114	N
F089057	Metagenome	109	N
F092229	Metagenome	107	N
F094006	Metagenome	106	Y
F099452	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2154051	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	514
C2186425	Not Available	981
C2197568	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	2057
C2199220	Not Available	2649
C2199436	All Organisms → Viruses → Predicted Viral	2763
SRS013502_Baylor_scaffold_30623	All Organisms → Viruses → Predicted Viral	1380

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2154051	C2154051__gene_72387	F094006	ACVAAMRGTLEPAGPTGALHEPTVSVEAHIGELQAGGIACRCLFAFGGRHLLAVAELGAEAPHAIDMHDIALCEPLSELFTEELEYAFNFGA
C2186425	C2186425__gene_86436	F089057	MTNIIPLIAKKYNRKGDTSGTLKSLVDDLVFIEDTNDSLLFITNIPRETKYSIEEVFNIITSNDKYSEVLSNVLSSLSIDLDYHKLLLNAIDSESYKIISLISDNIPTPDLFLSKNNYGCLTTALGKSYTIFDKVLGMVISQLLHTSSKEDKILSLFMTICIVNKDIDKLASLCTGYLAITKDEVLVKKLMNESAMTAFKYMSDEDIHTVVDDINSRSVLARYLSRM
C2197568	C2197568__gene_92069	F081455	METTNTENKNLFQQLARLGFDVNKSLLELEKDYSPVEEIGMQNVEIIDSAEEAIQQPLANTDSGIAVNFSQMINKPEVEEVKTEVASVPDNGETKVNVFFPKNEHILSNYVDYDSFNKIKESNTETIVRAVRLLNYKMSDQNAAMKFGQFVSEFNSECDPNKRLRYELIRHQGREKDLVVRLSTVVNGTTKYYADIYPDLNKIDIDHHLISSARK
C2197568	C2197568__gene_92070	F080166	VNILANFENYTKVVEQIFELNYQLTLKMEVTFNNIIKRINTEIKENFHTEYVVGANKLTTNLRYRYRMRLSPRGETVGVIIDWDNYDDLCNIIDEAIDICDPNNKTSPFKRMYSTAGDLLDIKCDSLKVRYLHLEDRFGNRLDLMPFVLIDDHNGTLTEAMKFRFNNDLIFDIPVSRLKGFRRFLMTYNPLLHAGAMARYMSMTPLLGNNRQNMMR
C2199220	C2199220__gene_93043	F099452	MDKTYTELLQETLSKIYELKDLNNRDRGKALTIFIGEKLNRELILSSMNIFNLYKDIINLDDVLLLTELRHTEWYRDWFTSDKRNSDLIDLSRFNFRVLERFEKEEYLRDVEHYDFEGVIEVDSYGLCNTLREDEDIELFKLAAENILLNHGFFNNTDYNLYEVPDEYMSDQEVCLYMCLLNKDNLDFMDKKTFDSTLLYNIVKDRICGSIYFTIFDSLNEDTRTRAR
C2199436	C2199436__gene_93177	F092229	MNKEYRFKHIPEVVLRNVKFIRENNIDIGTGDDVLECMMDINPVLRQRIYNDYDLAKDVAERRFHTNIEELDLTTILQKCTTRPYIAILNNIYFRYFNSKLIDDMFKLGESTKVLDLAIEYECEYYTVNSAKTNIRRYMQQAYFDKYAADADIISSHRVLSDPQVNAVKSAEFTYDLLVAARSENFNPEMVRDIFLKYGLKTNSSRNLYNRMDNNLSLFYYLEDYLEEYVNTGKFTYGSQEYSTIKEFKYLPLMNVLTQLTSSNPSGYVLNHKLELVKG
SRS013502_Baylor_scaffold_30623	SRS013502_Baylor_scaffold_30623__gene_36061	F054110	VNYQPTIKKLLKALQMNGRRYVVDVRQSWSKYDKPCKVYIVNRMYTEEEYKLTFPHKYKKGKTFKPKQLYKKESEYSSTKQHEVLLFLVKTYKGGE