7000000127: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 159268001

Overview

Basic Information

• IMG/M Taxon OID: 7000000127
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052611 | Ga0031309
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 159268001
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 120332412
• Sequencing Scaffolds: 17
• Novel Protein Genes: 17
• Associated Families: 16

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae	1
Not Available	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cytophagaceae → Spirosoma → Spirosoma linguale	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium 3519-10	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030786	Metagenome	184	N
F033081	Metagenome	178	Y
F040149	Metagenome	162	N
F041827	Metagenome	159	Y
F043990	Metagenome	155	N
F045567	Metagenome	152	N
F051211	Metagenome	144	N
F051214	Metagenome	144	N
F053092	Metagenome	141	N
F058221	Metagenome	135	N
F064819	Metagenome	128	N
F066860	Metagenome	126	N
F067847	Metagenome	125	N
F068942	Metagenome	124	N
F071328	Metagenome	122	N
F094006	Metagenome	106	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
C2712321	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	519
C2732660	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	592
C2774982	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae	884
C2800446	Not Available	1393
SRS023926_Baylor_scaffold_23330	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1317
SRS023926_Baylor_scaffold_27157	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	4799
SRS023926_Baylor_scaffold_27771	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cytophagaceae → Spirosoma → Spirosoma linguale	1565
SRS023926_Baylor_scaffold_29136	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1262
SRS023926_Baylor_scaffold_30182	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium 3519-10	1481
SRS023926_Baylor_scaffold_33747	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	770
SRS023926_Baylor_scaffold_55210	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	503
SRS023926_Baylor_scaffold_58120	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	791
SRS023926_Baylor_scaffold_58980	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	660
SRS023926_Baylor_scaffold_74333	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1171
SRS023926_Baylor_scaffold_75432	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1786
SRS023926_Baylor_scaffold_75679	All Organisms → Viruses → Predicted Viral	2155
SRS023926_Baylor_scaffold_75775	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	2673

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2712321	C2712321__gene_164664	F051214	TRSLRRPKTDLYPYIPNLGYRSLKGAHMPGKIVAHDTHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHNEDITIKPIYIYNNREYQIACEFLRQVMHDKIDLKDEWIA
C2732660	C2732660__gene_170817	F064819	DSQGKDRIKFSDIVRLNKEEPVFVKMKVRISTETMVSEENLDVERSDLEDLTRNLKDLCECKIRKFLFQNIDETIEIVFSINDIGTIAVEGKMYDESYMNSINFSFQTDLNGIATFSKEISQELKKI
C2774982	C2774982__gene_183315	F068942	MIRKILSLPTLALCFTLGSAFFAGCNEDYIEDTETKVRWSNVKPPQYGDPINITLKAEGETFTTMGDYPWISFRSYASTLDTFTRHSFSEADKDTAYYKDIVIYLTRNKREQTATLKLVAPPNRTQQPKQFDFSIGVTPLGTYIFKVRQPALPAKA
C2800446	C2800446__gene_191317	F071328	MKWEFILEGEYIVEFVKLCKHLVLERTIDPKKHQAAAIYLRYSSQLLLKKRRAIRRLGIEKEYVSAILRQYGIHYREYGDNEHRVFFLDTGINIYFSKHHQSSIYIIQRIEFSNEEYRSFILKVLPVKKSEW
SRS023926_Baylor_scaffold_23330	SRS023926_Baylor_scaffold_23330__gene_29987	F040149	VADEGAEELRWKVLIKEQGIPVLFVEVEAWYDGRVSSSEILRSVGIALEREPRLTPVWSHNSEDAIHDFIYDISVPERHTLTAVR
SRS023926_Baylor_scaffold_27157	SRS023926_Baylor_scaffold_27157__gene_35233	F053092	MQSDQGLILCLTHALLVLGALILEPAEMEDTMDDHTVQLFGILIAKELGIATHRIKADEHVPRDHIPLTLVEGDDIGIVVMIEKVLIGLQDALITTELVAELADTTVIASSDLTDPVAKDTLSEARLLDVFVCIVSYKLRFFRHK
SRS023926_Baylor_scaffold_27771	SRS023926_Baylor_scaffold_27771__gene_36067	F030786	MLVVMIVTGSLQLLLKNGSAAKGGNATGAKKISLADITGGDDSETGVLKVKYFDDEGADKIFENNNNRILNTVNNQHISYNSQSAEYSKPQLFLLYQSLKVDC
SRS023926_Baylor_scaffold_29136	SRS023926_Baylor_scaffold_29136__gene_38037	F066860	MTTKKQKLQKQQAIDTWIVIALWVSAIWFSLARGFITGIGGWVLALLGPWALIVSCICLAIISRQMKKRHASKDHLTTIVRVSFIVMSISLFICGLAMPDFSDMETFSTLSVYTNNAISFETSKTIAIISGFVVVLSLLVVVTFGIAEDRE
SRS023926_Baylor_scaffold_30182	SRS023926_Baylor_scaffold_30182__gene_39582	F058221	MGKIKNFQDLKNQKEELRAEIKEIESVLSFENPRKSFGVITNGVTEKYLGGMMDSSLAQNAFFLADKFLFPSLKIGSAKLLSNALLKRVRPSMKKTLIGLGVAVLTPIVIMQIKKRLDDFQQRETAKSLSKLI
SRS023926_Baylor_scaffold_33747	SRS023926_Baylor_scaffold_33747__gene_44606	F033081	MAWLFRRAMPQDTRPTFVWSRLVTEIENAGYFSRRKSSILAVGLIIMTIAMIKMLLFVPGLNQSVVSLLTRGLETFLPTGWATATAWIVGATGVFLMGNFTSYTKKQKSLQSLKATGCGMYNTLLLFALLEEQAFRSGSERWNWRERVRASVCFGLLHVTNIWYSFAAGIALSVTGFGFLMVYLWYYRK
SRS023926_Baylor_scaffold_55210	SRS023926_Baylor_scaffold_55210__gene_76638	F043990	MIKKLGILFTIGVIILGIVVYANHKIESSAIEREFGVNMSNMNIDEKYRKEEWAPNGDGEKTIILTYDQLDSSFTKLNKLPIKEDLPPNGIPKQFLNITNGYYKYVVDENDDRNFDILIVDTTRKEICIYYQIL
SRS023926_Baylor_scaffold_58120	SRS023926_Baylor_scaffold_58120__gene_81112	F041827	RLVLARLFEFSSNVRFQYKNGNEINRMAMDGPHGEASMDFEYDAYGRIVKERRFHHRSDYGETIITYQYDNQSRLTSSHAISTQYYPDTGYTPRCSVEKRHTYTYQGNKVTVKIEMGADTCSAIPETGKEKTITLFVENGKVVKSLDENNQIIETIEYLNTKNTLRNMKGFPPLVVEFYIRKFTYELPFYNGIEHIEDLRFIDNIKTRDFHNGSYWEYRYSYNKKKTYDNDYLEREKITVYEKSHNDPTHDNYLFSVSPSRYY
SRS023926_Baylor_scaffold_58980	SRS023926_Baylor_scaffold_58980__gene_82460	F094006	MWSALEPAGPTGALYESAVCVEAHIGELQTGGIACHGLFAFEGSNVLAVAELGAEAPHAINMYDIAVCEPLSKLFAKELEYAFNFGA
SRS023926_Baylor_scaffold_74333	SRS023926_Baylor_scaffold_74333__gene_110617	F041827	RDLENNETPAPQNEKLVLLEQLYEGSTVTFQYKNGNEIESVNIDGGVGNSDIDYEYDTYGRIVKERRFHRRYDYGETNITYQYDNQGRLASSHAISTEFYPGTGLTPRCSVEKKHTYTYQGNKVTVKIEMGADTCSAIPETGKEKTITLLVENGRVTKTFDEQGNIVQTIEYYNTKNALRNIKGFPALVVEFYIRPITYELPYYNHGIELIKDLRYIDNVKIIDLHEDDYMLYEYTDDKGNSYDGDYPTKIFVFDKSHNDPTYSHQLWMFNASRSYIIKE
SRS023926_Baylor_scaffold_75432	SRS023926_Baylor_scaffold_75432__gene_113831	F051211	MRVKKAIKVFEKIRDLPYGTSGSDEVWSCYQKCVLLKQELQHIGITSQLLIGVFDWQDLQIPEHILKIRRQQYERHVILRVFIDEFAYDVDPSIDIGLTPMLPMACWDGKSSTTTMAPLRRLRVYRPHSLHERILSQLRRKIFRSNPESFYTAIDIWLATIRVS
SRS023926_Baylor_scaffold_75679	SRS023926_Baylor_scaffold_75679__gene_114601	F067847	MFSHIIRVRGIFDDEPTTKKLYFHMSRREMFDFIKRYDNVTNFEKWLQAAIDNEDLYTMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPSLVREFYNGILPEKIMKQVQQDPKYKELDNKLKETELNNL
SRS023926_Baylor_scaffold_75775	SRS023926_Baylor_scaffold_75775__gene_114878	F045567	MRQRDGRDTLTEELEGGITPLLYRAEGEARRPWVRMVTEDVVHTSTHRVEDALLPVDGDILTPRDGTHIVQTERVVVVLVSQEDSIDTIDTETCGLVVEVRATVDEDTLPTLGDDEGRGAQTTVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKEIPSLSSERGCVVERVVR