7000000110: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 158458797

Overview

Basic Information

• IMG/M Taxon OID: 7000000110
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052594 | Ga0031001
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 158458797
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 70219335
• Sequencing Scaffolds: 15
• Novel Protein Genes: 16
• Associated Families: 15

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cytophagaceae → Spirosoma → Spirosoma linguale	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F030786	Metagenome	184	N
F040149	Metagenome	162	N
F043991	Metagenome	155	N
F049707	Metagenome	146	N
F057446	Metagenome	136	N
F063778	Metagenome	129	Y
F073671	Metagenome	120	N
F085821	Metagenome	111	N
F090516	Metagenome	108	N
F095632	Metagenome	105	N
F097526	Metagenome	104	Y
F101358	Metagenome	102	Y
F101359	Metagenome	102	N
F101360	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C1858827	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	634
C1893965	All Organisms → cellular organisms → Bacteria	1421
SRS011098_Baylor_scaffold_14553	All Organisms → cellular organisms → Bacteria	983
SRS011098_Baylor_scaffold_14683	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	1473
SRS011098_Baylor_scaffold_18235	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	15141
SRS011098_Baylor_scaffold_27198	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cytophagaceae → Spirosoma → Spirosoma linguale	1136
SRS011098_Baylor_scaffold_27433	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	19634
SRS011098_Baylor_scaffold_39551	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1087
SRS011098_Baylor_scaffold_40187	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1399
SRS011098_Baylor_scaffold_45639	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	18358
SRS011098_Baylor_scaffold_47330	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	10293
SRS011098_Baylor_scaffold_49109	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae	26214
SRS011098_Baylor_scaffold_49119	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	1486
SRS011098_Baylor_scaffold_49394	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	13573
SRS011098_Baylor_scaffold_5378	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	3344

Sequences

Scaffold ID	Protein ID	Family	Sequence
C1858827	C1858827__gene_104260	F101359	KFLSKRSILVGALALVLGFIVSSCSRDKDDDAIYTAKLQVQHHSNNSRNSAVNGSVTYRDANGNKRKIYLRSGMSESISFEVNKGFKSFVEVKATDIYGNLFVKWTVTKTYTGARVQNWSTNFTSYTGQGITDSYKETVK
C1893965	C1893965__gene_113828	F101358	MTEKYSASPAAKEETSASLPPRQPEHLLTQPITTDGTPQERATHPDTYSIPKRQDVPRHQWNVLRSSGQLDEGWVDREIIDKDGTVLVRMTKLVNRSNIHQLEKCVPLAVLQEQNIDFTNAYLQKAYGVMVKDGRLQPVADTTHTTHQNDSTDEQETEVLPAQGGDTHEHLDGDSARQLVGSVAAKASGEVDNSPLVQRALERIR
SRS011098_Baylor_scaffold_14553	SRS011098_Baylor_scaffold_14553__gene_17090	F040149	VADEGAKEFRWKVLIKEQGIPVLFVEVVAWYDGRVSSSEILSSFGIALEREPRLSPVWSHDSEDAIDYFIYDASVPKGHALTVVRERETVVVQLLNIHRMF
SRS011098_Baylor_scaffold_14683	SRS011098_Baylor_scaffold_14683__gene_17269	F101358	MTEKYSASLPPRQPEHLLTQPITTDGMPQERATHPDTHSIPKRQDVPRHQWNVLRSSGQLDEGWIDREIIDKDGTVLVRMTKLVNRSNIHRLEKCVSLAVLQEQNIDFTNAYLQRAYGVMVKDGRLQPVADAAHTASQSSATEQETEILPAQGGNTYDHLGGDSACQLVGSVAAKASDTEVDNSPLVERVLGRVE
SRS011098_Baylor_scaffold_18235	SRS011098_Baylor_scaffold_18235__gene_22064	F018385	MAEYVNRWDPYSELSIEKDRDPVLDDHLIYGTNVEHYTLTVYSPEGRVSKYWNARILKDDLGRCRIACPREGKILCFSWFDWDAHMFTHDGMNELVFAPKLNSRSPQSLWNKKEVK
SRS011098_Baylor_scaffold_18235	SRS011098_Baylor_scaffold_18235__gene_22067	F043991	MGKKKPSAVDGFDLNGNVIEEANEFDGVLIEEWVNQRSPLKPSWVGRYSDQMHFDLKNGTEVSFYKRPDIVYGDILFAEGIRTILFKCRQKKNLTRFISRVLKLAEMGPSSVHPDLRA
SRS011098_Baylor_scaffold_27198	SRS011098_Baylor_scaffold_27198__gene_34613	F030786	MLVVMIVTSSLQLLLKNGSATKGGNATGAKKANKISFADITDGDKSKVVAIKVKYFDDEGADKIFENNNNRILNTINSQHISYNSQSAEYSKPQLFLLYQSLKVDC
SRS011098_Baylor_scaffold_27433	SRS011098_Baylor_scaffold_27433__gene_34929	F073671	MNKEQVEHELAELHEKERSLEKALELVREKIRELINYTNKNKAAR
SRS011098_Baylor_scaffold_39551	SRS011098_Baylor_scaffold_39551__gene_52785	F057446	MNSISFGKTTIMSYPEYFEIADNKKTNKLLYLSASFVFIAIYLFDLYQNDFDFAKVSHFKTISAVLWLVIFALQFWLINTENKIEKSKIKEVVVRKNRWTSIVIHYGDKKRKIDGFSQDEAEQIIKFLMNNR
SRS011098_Baylor_scaffold_40187	SRS011098_Baylor_scaffold_40187__gene_53821	F090516	MKSNLSVELFLAFERYFIENDEDVSLDKISSGFTNVVLGIEFLPQNMTEDVERKKKLLKKYGFSSATALAEDFRERVLNYDEPIPEDFEKDGVGYVYTFISGYDAFYKRMYVFGIHCFEDCFEVTYFDLDNDAGAGDYYKDLEFYSQAKGYRWLNPESSYYGDVLAWEALNKLATEIYFHLEDKLDVKLDIEPIPVGEKVTPTQEHLAKFLAFCGVEQEVIDENKERLLKALEEYTPDKQEYISDVVTWITEYSNEIERALPVTGIISDYGNTSFSDWKFSAEDLEECVLNLVDFDEWEWEYPADTYGSDLFPYMRKQLYCYGFWLCNLDTGADEYVFLLFPEEDMPEIMRLTKILGIPLKAYFK
SRS011098_Baylor_scaffold_45639	SRS011098_Baylor_scaffold_45639__gene_63776	F101360	MAAIAAHIAKVASQKKKKALKELEEYMAPGDTSKPQVDGLQVGTVSVSAPQPRYQVVDENALVTWLEWNKPDAVHKVPAPWFVATAALEGFIKQTGEVPDGVEVVQGDPRISVRVSGAQEEAIRELISSGDISLIEIEGGDA
SRS011098_Baylor_scaffold_47330	SRS011098_Baylor_scaffold_47330__gene_67236	F049707	VVSEYRSPHNDGHDPYILIWEYGNDIRRAEFSERWTKYDETGWTVWYFRLVDGGIMTFSSREWEQKDDVNHLTTIWMKPSLYDIERKTS
SRS011098_Baylor_scaffold_49109	SRS011098_Baylor_scaffold_49109__gene_71854	F097526	MQHFSAQPDGTAAITPYTQDDYRRLCERLDDDTVAALLHAHIDAFAADGNRQLLNRLTEGVRIAGEMEKAGRNGHPDPAEQARRERWDNQFRELQQQARMAHCEIVNADNAAVSRLTRQCEKNGSCDTAIPLPRDDYGFAAALRDFPLNEHQTALLWRMALLTIAEMMDAVPSLVAHYLNGIGGEHLGRALVEKTVYPATVVSNLAWLLHGQYKSGQLQRDLSHTSIH
SRS011098_Baylor_scaffold_49119	SRS011098_Baylor_scaffold_49119__gene_71882	F085821	MSNIFEQLAPLAETKKQQTTVAKFIEKGFKFTRQSDAQKFTFLVYDFFVAGNMPAVQLCIDYLVAQGYPTAENEKKFLNWVFMEPVYYLKYFISDASTQKKLHHDLLNLWYESSKRQLLEQDKGKHDEAYIDAWNEANVNKTLSIIRSGETIASCKEDVAKHSRTLNDEYEQNIGLLDEYCRALLYTAETTESQQELVAEIQNHIALLKDLYKKVNKIK
SRS011098_Baylor_scaffold_49394	SRS011098_Baylor_scaffold_49394__gene_72687	F095632	MTMSFKETTGYKVVSLVASTSASITAGAVVGALCPPAGVVLTAIYGVGSSVLGTYVGDKAGRQYAETLAETIDSMKKSHTN
SRS011098_Baylor_scaffold_5378	SRS011098_Baylor_scaffold_5378__gene_6034	F063778	MPETISEGAQQQLLQQLQEALGLVADADTSAHDVAAITHSAADGHQLTEVMLQEMTAARGYLKSCADQIEYAISSIKAIPLDPPPDD