7000000104: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 765034022

Overview

Basic Information

• IMG/M Taxon OID: 7000000104
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052580 | Ga0031057
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 765034022
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 54813094
• Sequencing Scaffolds: 11
• Novel Protein Genes: 12
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	6
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces → Actinomyces urogenitalis	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae → Cardiobacterium → unclassified Cardiobacterium → Cardiobacterium sp.	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F043991	Metagenome	155	N
F049707	Metagenome	146	N
F071329	Metagenome	122	N
F084342	Metagenome	112	N
F092231	Metagenome	107	Y
F095632	Metagenome	105	N
F097490	Metagenome	104	N
F097526	Metagenome	104	Y
F101360	Metagenome	102	N
F103434	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C1559657	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	588
C1568409	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia	678
C1603855	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	8185
SRS019225_WUGC_scaffold_16747	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	811
SRS019225_WUGC_scaffold_19245	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	817
SRS019225_WUGC_scaffold_19703	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces → Actinomyces urogenitalis	7380
SRS019225_WUGC_scaffold_2459	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	695
SRS019225_WUGC_scaffold_33832	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	572
SRS019225_WUGC_scaffold_34676	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae → Cardiobacterium → unclassified Cardiobacterium → Cardiobacterium sp.	5415
SRS019225_WUGC_scaffold_37912	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	6173
SRS019225_WUGC_scaffold_6428	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	9009

Sequences

Scaffold ID	Protein ID	Family	Sequence
C1559657	C1559657__gene_82669	F097490	SCSERKEIEVYNMKIDENKKEVLVEIRNNTEKNYYLLSPVVSAMADHGLNHVTSEMIEGQMYYKKLDSIVCSVCIWDDICKEEYYAMRDIVLLPKKSVKTIKYKYNNEKEYKIDEFYTVFPYNGYSNEIGKKMHFMLKKKLDSSNIIKGYEFYNKDIETMTIKM
C1568409	C1568409__gene_85449	F092231	MPRPTPQDFIAWTNTLVHFPWPIQLNDFAPYAEKLGWKPTLRPTWFSVCADDDVGNVIVSENESGNIYRLRVSMARNETEDFEGAAELNDHFVSCVAAGRKAWGEPFLLEAGDGPGVTWRFPGDMFTQVTSGCWSVLFQFFTPEGR
C1603855	C1603855__gene_97176	F095632	MSFKDTTGYKVVNFVASTTASITAGAVVSALCPPAGVALTVVYSLGSGVLGSYVGDKAGRQYAENFAETIDSIKTPSNN
SRS019225_WUGC_scaffold_16747	SRS019225_WUGC_scaffold_16747__gene_20544	F071329	MLPVAKIIISGLSSIGAGMIASKLTKPIVSNANGIAKILLWFGSVGTGIAASAIVAREVELQFDATVKAVQEARD
SRS019225_WUGC_scaffold_16747	SRS019225_WUGC_scaffold_16747__gene_20545	F018385	LHPWSLSRIFGTGITMAEYENQWGPYKEHSIEKDRDPVLDDPIIYGVNVKHFTVTVYSQDGRVNKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTAYMFTHDGLNELVFMPGSNRKTISRLWCEEVK
SRS019225_WUGC_scaffold_19245	SRS019225_WUGC_scaffold_19245__gene_23984	F043991	NPSVIDYFDLNGDLNEEAYEFEDVKLDEYIDKRSNVKPSWIGKYSHQMHFDLPDDTEVSFYKGLNIVYADINFAGGIRTILFKCRQKKNLTRFISRVLEIAQGDPSNVHPDFRA
SRS019225_WUGC_scaffold_19703	SRS019225_WUGC_scaffold_19703__gene_24562	F103434	VVEVTLAAVKEGRTGRRFERGETFVVDKVLVQPSAGNALKATENRVIRGDLTDETTLKVFGTGRKWPGGPHSWVKIIKGPESLVGKTFQQAGEPLTYDASPMTRHWSVRCDTLGTESR
SRS019225_WUGC_scaffold_2459	SRS019225_WUGC_scaffold_2459__gene_2623	F043991	NPSVIDYFSLNGDVVEEANEFDGISLEDWIDKRSSIKPSWVGQYSQQMHFDLPDDTEVSFYKTSNVIYADIIFADGVRTILFKCRQKKNLTRFISRVLELANLGSKHVHPDFRA
SRS019225_WUGC_scaffold_33832	SRS019225_WUGC_scaffold_33832__gene_46169	F084342	LGGYLAIPICRPFFAQALKETLSQERSLGDAYDKDYQNEKALQWIHRRHILGICKEE
SRS019225_WUGC_scaffold_34676	SRS019225_WUGC_scaffold_34676__gene_47712	F097526	MQHFSAQPDETTAIAPYTQDGYRRLCERLDDDTVAALLHAHIRAFAADGNRQRLNRLTEAMRIAGEMEKAGRNEHPDPAEQKRRARWDSNLAGLQQQARMAHCEIVNADNAAVSQLTQQCEKNGSCDTAIPSPHDDGYGFTAGLRDIPLNTSQTALLWRIALLTIAEMTDTAPSLVACYLNGTGGEHLGRALVEKTVYPVTVVSNLARLLHEQHKSGQLQRDLRHIAAREPENAAVMPAVAPEPVVTLQAAEQPEITIHNPTTGATL
SRS019225_WUGC_scaffold_37912	SRS019225_WUGC_scaffold_37912__gene_55107	F049707	VVSEYRSPHNDGHDPYILIWEYGNDIRRAEFSERWAEYDETGWTIWYFRLVDGGIMTFSAREWEQKDDVNHLTTIWMRPSLYDIERKEN
SRS019225_WUGC_scaffold_6428	SRS019225_WUGC_scaffold_6428__gene_7598	F101360	VSKESALRRAAIAAHIAKVASQEKKKALKELEEYMAPGDTSKPQVDGLQVGTVSVSAPQPRYQVVDENALVTWLEWNKPDAVHKVPAPWFVATAALEGFIKQTGEVPDGVEVVQGDPRISVRVSGAQEEAIRELISTGDISLIEIEGGDA