7000000097: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 160400887

Overview

Basic Information

• IMG/M Taxon OID: 7000000097
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052573 | Ga0027981
• Sample Name: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 160400887
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 13346352
• Sequencing Scaffolds: 4
• Novel Protein Genes: 8
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → Viruses → Predicted Viral	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027205	Metagenome	195	N
F036281	Metagenome	170	N
F043991	Metagenome	155	N
F051214	Metagenome	144	N
F071329	Metagenome	122	N
F074985	Metagenome	119	N
F077405	Metagenome	117	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C1015461	Not Available	584
C1025697	All Organisms → Viruses → Predicted Viral	1614
C1025961	All Organisms → Viruses → Predicted Viral	1742
SRS020222_Baylor_scaffold_2806	All Organisms → Viruses → Predicted Viral	2598

Sequences

Scaffold ID	Protein ID	Family	Sequence
C1015461	C1015461__gene_20343	F077405	ALPTELFPRLLVAKQRGVFYGFILLCQIKFVKNFFDWLKIIQKQKVRLK
C1025697	C1025697__gene_27758	F027205	DILKAVKESEEFERKALSEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYILDEYDIPRRIRK
C1025961	C1025961__gene_28036	F043991	MSKKNPSVIDYFDLNGDLNEEAYEFEDVKLEEYIDKRSNVKPSWVGKYSHQMHFDLPDDTEVSFYKGLNIVYADINFAGGIRTILFKCRQKKNLTRFISRVLDIAQGDPSNVHPDFRA
C1025961	C1025961__gene_28037	F051214	MPGKIIAHDTHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQIMHDKIDLKDEWI
C1025961	C1025961__gene_28038	F071329	MLPVAKIIISGLTSIGAGMIASKLTKPLVSNANGIAKILLWFGSVGTGVAASAIVAREVEKQFDETVKAVKEARDHVEIED
SRS020222_Baylor_scaffold_2806	SRS020222_Baylor_scaffold_2806__gene_2560	F074985	MMELTDGGWYKTPRIIKGKDFLAHIHDTYASGNAMYVEFKASEGEVRILEYRQLYEVDTESAVLFTINTYPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRFNLEQFDQLWLDQTFQKLHPVIVNHDGKFWHVMGLKLDVDADGSFWGLYLKRQDSDFMKEIRMPLTQKFIYNPISGSWSLDDPTQEIKDLEEIKQTLRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDPTTGEQKYLLDHIKAMYID
SRS020222_Baylor_scaffold_2806	SRS020222_Baylor_scaffold_2806__gene_2561	F036281	MITLIKVDEGPVDIYELRMQYLAKLKQTDGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYSPKEYYDYWAAREGKPAPFFYEAKQYHVKSFMRVPGSTDLWITAELEHGHWYTFRMSDDQKSKFTRHTMTNEKGHQSYDWVLENVEWAADTIRYF
SRS020222_Baylor_scaffold_2806	SRS020222_Baylor_scaffold_2806__gene_2562	F027205	DILKAVKESEEFEKKALSEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIKRSTK