7000000073: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 158479027

Overview

Basic Information

• IMG/M Taxon OID: 7000000073
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052545 | Ga0031299
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 158479027
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 135223466
• Sequencing Scaffolds: 24
• Novel Protein Genes: 24
• Associated Families: 23

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	3
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Flavobacterium → Flavobacterium johnsoniae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium 3519-10	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Chloroflexineae → Chloroflexaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030786	Metagenome	184	N
F033081	Metagenome	178	Y
F040149	Metagenome	162	N
F043235	Metagenome	156	N
F043990	Metagenome	155	N
F045567	Metagenome	152	N
F046431	Metagenome	151	Y
F047127	Metagenome	150	N
F047508	Metagenome	149	N
F051212	Metagenome	144	N
F057446	Metagenome	136	N
F058221	Metagenome	135	N
F061925	Metagenome	131	N
F061927	Metagenome	131	N
F063777	Metagenome	129	N
F064818	Metagenome	128	N
F064819	Metagenome	128	N
F071328	Metagenome	122	N
F077404	Metagenome	117	N
F090516	Metagenome	108	N
F092230	Metagenome	107	N
F098763	Metagenome	103	N
F105380	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2784578	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	736
C2808711	All Organisms → cellular organisms → Bacteria	931
C2819783	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1077
C2819931	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Flavobacterium → Flavobacterium johnsoniae	1079
C2821579	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1106
C2838777	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1528
C2839135	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium 3519-10	1539
C2849627	All Organisms → Viruses → Predicted Viral	2105
SRS021496_Baylor_scaffold_19842	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	7185
SRS021496_Baylor_scaffold_2918	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Chloroflexineae → Chloroflexaceae	1366
SRS021496_Baylor_scaffold_30801	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	3115
SRS021496_Baylor_scaffold_36952	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	805
SRS021496_Baylor_scaffold_4137	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	777
SRS021496_Baylor_scaffold_4973	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis	11684
SRS021496_Baylor_scaffold_56973	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	3629
SRS021496_Baylor_scaffold_61263	All Organisms → cellular organisms → Bacteria	12491
SRS021496_Baylor_scaffold_69950	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1113
SRS021496_Baylor_scaffold_74762	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2337
SRS021496_Baylor_scaffold_78286	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1301
SRS021496_Baylor_scaffold_79103	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum	5088
SRS021496_Baylor_scaffold_84573	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	797
SRS021496_Baylor_scaffold_85382	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2316
SRS021496_Baylor_scaffold_86192	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum	5557
SRS021496_Baylor_scaffold_86321	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2598

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2784578	C2784578__gene_199982	F064819	MILKDSQGKDRIKFSDIVRLNKEEPVFVKMKVRISTETMVSEENLDIERSDLEELTRNLKDLSECKIRKFFFQNIDEMIEIVFSINDIGTIAVEGKMYDESYMNSINFSFQTDLNGIATFSKEIS
C2808711	C2808711__gene_207263	F047508	MLGHRLVEGCVKYPYLRRIGEYLRHSFDTEDVGWVVKRSKLCALMEHIYYLWGDTYALSKALCTVYEAVTDGVDLIEGLYEVLFFENVEDNLYAACVVRNVKVALDLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQGGAATVEDQDFHKVLYYYGKV
C2819783	C2819783__gene_210728	F064818	NKIRFGINKNSYTEMRFDYSQNYKGFYLQLASYNKEVGDFFEQEMGNSFLKMLEDESKEFRNLFFVQNSFQISHYYYGFPIMTNDNTGHLYPEMGTTIFNDILRNLQANHFKFIQAAEVLSPDLLHYIKKFPSCFFNTALVALLIIEKNLLSLNDERVQGLFEYDNMVTKNECKLFSPFDLIFGKKDYQQTAKQRILQRR
C2819931	C2819931__gene_210789	F090516	MKSNLSLKLFLAFERYFIENDEVISLDKSSEFTDVIVGIGFLPQDMSENTDFKKKTLEKYGFSSSTALADDFRKRVLNIDEPIPENFEKDGIGYVYTVISGYDTFYNRMYMFGIHCFNGDFNVTYFDLENDAETGDYYKEHELYSQAKGYRWLDPESDYYEDVLAWEALNKLATDIYFHLEDKLDVKIDIKPIPEEEKVVPTQEHLAKFLAFCGVEQDVIDENKERLLKALEEYTPDEYEGVSEVMAEMMEYSHKIQRAEPVIEIIREYGVCRFSDWKFYAEELEEYILDLADFSDWKWEYPADTYSADLFPYMRKQLSLYHLWLCHLDEGADAYLFLLFSEKDMPEIMKLARILDL
C2821579	C2821579__gene_211309	F092230	MVDKFKTHLLKVFLPLFIVCIILVAFFRQIGCGSDGDYAFQISEWGAKLKNIYGTDFINKEIIVRDNAVRVDGIRCLYAVNQNEDGLSIYLLLPGGDYLTHNYVGSSFVRFSNSSEYINMAYGEGSVEVSDSTSTGEAQNTEEKEARDKVDEAINSMRHLFASAIMVNLRVVELYKILTVCMILIVIAMTIGYYSYLKPETVYEFYCKLRRKEKYPSDVNLVKRIGFLVIIL
C2838777	C2838777__gene_216785	F047127	IIFMKKTFAFILLSIISLAKAQQTDIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERRQAVRLWDKDIFYLEFTDRKMNKRVFRQIPELKKNGKLFEVMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIVNIPVKGRYKKKLKALLSDRPEIAKEVDQMVGDRDIREILEKYNSK
C2839135	C2839135__gene_216896	F058221	MGKIKNFQDLKNQKEELRAEIKEIESVLSFENPRKSFGVITNGVTEKYLGGMMDSSLAQNAFFLADKFLFPSLKVGSAKLLSNVLLKRTKPSMKKTLIGLGVVVLAPVVIMRIKKRLDDFQQRETAKSLSKLI
C2849627	C2849627__gene_220549	F105380	MSILELDATQYVKQGRIFKKFDSNLLDSYMDGRQNNYNINLAELDDQISDGIVYADRNGKMIYKFGAKKIIQTAITNGLEISGLSKDLEMKHYSFWVPDLYFVSFYSFNPNEDLYIAYRSKDEEFICLTNIWPDGSSYAEDYFPNGDRLTLKRLCKGSMMSDVSSSDYDAWRNNAVTRASQFVNKFVSARGNSDLDFVGSALRSKVPSHNIKKCAVFLGTITKEQENVNTYEEFMEWTKNTKWFK
SRS021496_Baylor_scaffold_19842	SRS021496_Baylor_scaffold_19842__gene_24387	F030786	MKRTKIHNVVFQMLVVMIVTGSLQLLLKNGSAAKGGNAMGAKKISLADITGGDDSETGVLKVKYFDDEGVDKIFENNNNRILNTINSQHISYNSQSAEYSKPQLFLLYQSLKVDC
SRS021496_Baylor_scaffold_2918	SRS021496_Baylor_scaffold_2918__gene_3158	F033081	MAWLFNRVMPTDSRPVFVWPKLVAAIEDTGNFGKRWLTAIATGLIIVTIATIKALLMIPGLDSSVVGLLTSIFETFLPARWATGAAWIVGTTGVFLMGNFTSYTKKQKSLQSLKATGCGMYNTLLLFALLEEQAFRSGSERWNWRERVRASVCFGLLHVTNIWYSFAAGIALSVTGFGFLMVYLWYYRKYRSQIIATAAA
SRS021496_Baylor_scaffold_30801	SRS021496_Baylor_scaffold_30801__gene_38966	F043235	MDEVIPSDEGHLLIDLCDDDPRSLCGGLGIVTRYPEGAIALFIGLAHRDQCDIDRIDTIPKEVWEFMEVTREIVDTLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLLPGSAH
SRS021496_Baylor_scaffold_36952	SRS021496_Baylor_scaffold_36952__gene_47559	F098763	MDRRTSLRILSTALYLATKLFEAVVRATISYDPSDEVEGKGGMNAIPTAVDE
SRS021496_Baylor_scaffold_4137	SRS021496_Baylor_scaffold_4137__gene_4753	F033081	MAWLFRRAMPQDTRPTFVWSRLVAEIENAGYFSRWKFSILAVGLIIMTIATIKMLLFVPGLNQSAVSLLTRGLETFLPTRWATATAWTVGMAGVFLMGDLTNYTPSQKILHKIKATRYEVYNIILFLALLEEQAFRSGSEKWNWRERVRASVCFGLLHIANIWYSFAAGIALSATGFGFLLVYLWYYRKYRIQIIATAAAATVHALYNAIALSLIAVVLAIDIAKL
SRS021496_Baylor_scaffold_4973	SRS021496_Baylor_scaffold_4973__gene_5807	F040149	VADEGAEELRWEVLIKEQGIPVLFVEVVAWYDGRVSSSEILRSVGVALEREPRLAPVWSHDSEDAIDYFIYDTSVPKGHTLTAVRERETVVAQLLNIHRYVYYP
SRS021496_Baylor_scaffold_56973	SRS021496_Baylor_scaffold_56973__gene_77090	F077404	MVQQIIITRRLVGAALSLKEPTQIGNTKNPFAMNILKTVFAFFFALCFMMGANSYAQKTECINAEASKRELKRNAVYLPPALEEYADTILLHQRFIVENKGNYLYTPFTKDNEPSIPFNYGFLHPLDERFYNSFMGKVDRILRPKEDKGFIILTNYLVVLDDKYAFDASNKDTSKLADLKYLDFRRIKSDFSYGHPYQGFTDYDRVELSNFVQSYGRQAALETANAWVMASYPFSLQSTKFENRYTRGRKLILTDGKTTLYLYFLMTDSVALNFDTEVLPYIKGVFRFNRIQ
SRS021496_Baylor_scaffold_61263	SRS021496_Baylor_scaffold_61263__gene_83674	F071328	MKWKFIPEGECIVEFVELCKHLVLERTIDSKESLTTAIYLRYSSQLLLKKKRAIRRLGIEKENISAILRQCGRHYKEYGDDEHRVFFLDTDVNIYFCKHYQLPIYILQRIEFSNKEYRPFILKVLPWKKDEW
SRS021496_Baylor_scaffold_69950	SRS021496_Baylor_scaffold_69950__gene_97565	F046431	MLTYTQILVFAVESELTLIPNPETNNIHLKWTGPQNSSYKVYQKKPGSSNFETIGLTDFNNVDEEVKVLNIYPTIEGLPMVNVTYLDGQTETIPKSGLLKVWMEGRNSK
SRS021496_Baylor_scaffold_74762	SRS021496_Baylor_scaffold_74762__gene_105861	F057446	MNSISFGKTTITSYPEYFEITDNKKTNKLLYLSASLVFIAIYLFDLYQNDFDFGKVAHFKTISAVLWLVIFALQFWLINTESKIEKSKIKEIVVRKNRWASIVIHYGDKKRKIDGFSQDEAEQIIKFLMNNR
SRS021496_Baylor_scaffold_78286	SRS021496_Baylor_scaffold_78286__gene_112562	F061927	LNYIIMKNPIFILSAMFILGACSSESAKKAYNDSFRKTFIEEGVKSCIENSGLKESEAREYCECAMNKINENLSNDEIIDISMDNPPKDLDERIDKAISSCVENKP
SRS021496_Baylor_scaffold_79103	SRS021496_Baylor_scaffold_79103__gene_114159	F061925	MSWEYSINLDSEEAVSSVVTDLKICELFSSSTTDYIDWKNPKSIDSTPYDARFYTDKKKTIYIAINSFSKNIFSALKSILAKQNYHLTDCDTDEEVTLEHIFRSVI
SRS021496_Baylor_scaffold_84573	SRS021496_Baylor_scaffold_84573__gene_126905	F045567	MVTEDVVHTSTHRVEDALLAVDGDILTPRDGTHIVQTERVVVVLVSQEDRIDTIDTETCGLVVEVRATVDEDTLPTLGDDEGRGAQTTVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKEKPHLTEREGAW
SRS021496_Baylor_scaffold_85382	SRS021496_Baylor_scaffold_85382__gene_129639	F063777	ILNIKISALPPENNSFWMKLLLYLCVPFLFIFGILLLIGWGIYSGISSIISAVKEDFFGIKDKTNIKTSKNILFENEQFKLKKEDYLPDENSQEYKIFDDFCAKSNEYLDDGYIFYRLTDEKSATELNGAIISEFQEDVGNYILLQNLILEDNQLKNQLISFNKNTGKITVLADIKDFFWLDFDSETKTINGYNNKEQIEITISE
SRS021496_Baylor_scaffold_86192	SRS021496_Baylor_scaffold_86192__gene_133128	F043990	MIKKLGIIFIFGVIVLGIVVYANHKIERSAIEREFGVNMSNMNIDEKYRKEEWAPNGDGEKTIILTYDKLDSSFTKLNKLPIKEGLPPNGIPKQFLNTANGYYKYVVDENDDRDFGILIVDTTRKEICIYYQI
SRS021496_Baylor_scaffold_86321	SRS021496_Baylor_scaffold_86321__gene_133876	F051212	MKKFFFIFVLYWLHSCNGTEKAMPTSPDTQKTSISEKQNTEKIERVIYESGGDKSGKNVHLVITKDSIIYRLTEGVTDEKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSEELIMDLPTTKIIIKTDKKEYSKTDIQANKTWDYITKQIIDIKYSQLNNHLNLEK