7000000061: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 763860675

Overview

Basic Information

• IMG/M Taxon OID: 7000000061
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052533 | Ga0031243
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 763860675
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 73136561
• Sequencing Scaffolds: 15
• Novel Protein Genes: 15
• Associated Families: 15

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	4
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
Not Available	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium 3519-10	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F036281	Metagenome	170	N
F040685	Metagenome	161	N
F041827	Metagenome	159	Y
F043990	Metagenome	155	N
F051211	Metagenome	144	N
F053092	Metagenome	141	N
F057446	Metagenome	136	N
F058221	Metagenome	135	N
F066860	Metagenome	126	N
F071328	Metagenome	122	N
F072446	Metagenome	121	N
F097490	Metagenome	104	N
F098763	Metagenome	103	N
F103432	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C3039953	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	553
C3056064	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	654
C3072672	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	836
C3076736	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	906
C3086107	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1134
C3099505	All Organisms → cellular organisms → Bacteria	1973
C3100873	All Organisms → Viruses → Predicted Viral	2189
C3101721	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2331
C3106191	All Organisms → Viruses → Predicted Viral	3989
SRS014888_WUGC_scaffold_14824	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1559
SRS014888_WUGC_scaffold_29305	Not Available	1188
SRS014888_WUGC_scaffold_30875	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae	7328
SRS014888_WUGC_scaffold_31301	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	516
SRS014888_WUGC_scaffold_33254	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium 3519-10	1539
SRS014888_WUGC_scaffold_6531	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1051

Sequences

Scaffold ID	Protein ID	Family	Sequence
C3039953	C3039953__gene_90498	F040685	RIQTAFIMKKLLFKLFFALAFASISLHGQEKIQQVEVHIFGGMALYSSQYTLNSLKKEFSAKPLMGQKEELPKEISLPNTPKNWETFTKKINLDKFKKLRDGPSQQAFDGQDEVIIIKTDKKTYRKMNASGNDHDRKVWYDLLQIIAKEFGKKSIYE
C3056064	C3056064__gene_98062	F066860	MTTKKQKLQKQQAIDTWIVIALWVSAIWFSLARGFITGIGGWVLALLGPWALIVSCICLTIISRQMKKRHASKDHLTTIVRVSFIVMSISLFICGLAMPDFSDMETFSTLSVYTNNAISFKTSKTIAIISGFVVVLSLFVAVTFGIAEDKE
C3072672	C3072672__gene_106509	F097490	MFLKTQKMNKKMNVFCKIILPLLCIISCSKRDEIEVYNMELDEEKKEVLVEIRNNTENNYYLLSPIVSIMTKHLQDIGGEMIEGQIHHKKLDSIVCSVCIWDDICKEEYYAMRDIVLLPKKSVKKIKYKYDNEEYIEIETVHIGFPYNGYYNEIGKKMQFMLKKKLDSSNIIKGYEFYNKDIETMTIKM
C3076736	C3076736__gene_108790	F041827	LALGCLLLSCNRDNETNETPAPPQNEKLVLLKSASPGGIELNYKNRNEIESLSTDGMYGKSDINYEYDAYGRIIKERRFSHRYDYGETNITYQYDGQGRLTSSHAISTEFYPGTGLTPRCSVEKKHAYTYQGNKVIVKIEMGTDTCSAIPETGKEKTITLLVENGKVVKSLDENNQIIETIEYHNTKNALRNIKGFPALVVEFYIRAFTYKLNWYNNIELVQDLRFIDNVKTRNYPNGNYIMYEYRTENYEITDKDYPYKVIALDKSSSDPTQQSLVYMNERNYIEEQ
C3086107	C3086107__gene_114354	F057446	MNSISFGKTTVTSYPEYFEITDNKKTSKLLYLSASFVFIAIYLFDLYQNDFDFGKVAHFKTISAVLWLVIFALQFWLINTESKIEKSKIKEIVVRKNRWASIVIHYGDKKRKIDGFSQDEAEQIIKFLMNNR
C3099505	C3099505__gene_124442	F071328	MSRKHWTFINLIRYIEEYERNPLLIERMKWKFIPEGECIVEFVELCKHLVLERTIDSKESLTTAIYLRYSQQLLLKKKRAIRRLGIGKKNVSAILRQCGRHYKEYGDDEHRVFFLDTDINIYFCKHYQLPMYIIQRIEFSNKEYRSFILKVLPGKKDEW
C3100873	C3100873__gene_125759	F036281	MITLIKVDEGPVNIYELRMQYLAKLKQTDGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWSVREGKPAPFFYESRQYHVKSFMRVPGSTDLRITAEREKDHWYTFRMSDAQKSKFTRHTMTNEKGHQSYDWILENVEWAADTIRYF
C3101721	C3101721__gene_126628	F051211	MRVKKAIKVFEKIRDLPYGTSGSDEVWSCYQKCVLLKQELQHIDITSQLLIGVFDWQDLQIPEHILKIRRQQYERHVILRVFIDEFAYDVDPSIDIGLTPMLPMACWDGKSNTTTMAPLRCLRVYRPHSLHERILSQLRRKIFRSNPESFYTAIDIWLATIRVS
C3106191	C3106191__gene_132401	F018385	MADLINSWLPYQELSIEKDRDPVTDDEIIYGNNVKHFTLTVYSPEGRVSKYWNARILKDQVGYCRVACPREKKILCFNWVNWTAYMFTHDGLNELVFMPDSRRRAVSQLSFDN
SRS014888_WUGC_scaffold_14824	SRS014888_WUGC_scaffold_14824__gene_14330	F053092	MQSDQGLILCLTHTFLILGALILEPAEMEDTMDDHTVQLFGILVAKELGIATHRIKADEHIPRDHIPLTLVEGDDIGIVVMIEKVLIGLQDALITTELIAELADTTVIASSDLTDPVAKDTLSEARLLDVFVCIVSYKLRFFRHK
SRS014888_WUGC_scaffold_29305	SRS014888_WUGC_scaffold_29305__gene_29400	F103432	MKLIHSLFSLSLLLALSGLFCTTACQDEAEPTQRAGLISTDSLIHAAKVYDGKAFEHVVSTTAAGLRVSEPRRIVPMLPRQLHVEMEGKTIFRRHNLPSVSAYSFQVLAVGDTIYRQKESDAQFNADLDALFHQSIGIAPRLFGVKELSVLGIDSRGKTRDLGNYSCPLLQGKIKNVNYRTREGVFHEHYEAASVDTFSVKDDWLLNTKAEPSLYVPSFRLLVWDQPAEGCTKLRFTLTLVDGRSLVTEVPLY
SRS014888_WUGC_scaffold_30875	SRS014888_WUGC_scaffold_30875__gene_31240	F072446	MKKLVFLLFGLCLYCFTACDSDHEPTKPVRPFHGDTLAQIAWNFRFIVEEHYHSIPGIVPEGTTYRVPVIPRSVEDRTKKEYNEQDVDKVAHLVFRATVHGDTINRHKKELETLARQLHALTLTTIGTSPVLCGVKSIKAVGVAENGRTYDLSWEMKLRIRDYSGRVKYNSGIVTLDCEDTESLTARYVVQLGQIREHELAEHIQPELKFYLPVKRCMDFSSIRFDITLFNGEVLSFQHKLPSKSVLQELPNNSVLENYKQYGFEREATYFTTLWPVPEKEIER
SRS014888_WUGC_scaffold_31301	SRS014888_WUGC_scaffold_31301__gene_31825	F043990	MIKKLGIIFTFGVIILGIVVYANHKIESSAIEREFGVNMSNMNIDEKYRKEEWAPNGDGEKTIILTYDQLDSSFTKLNKLPIKEDLPPNGIPKQFLNTTNGYYKYVVDENDDRSFDILIVDTTRKEICIYYQIL
SRS014888_WUGC_scaffold_33254	SRS014888_WUGC_scaffold_33254__gene_34704	F058221	MGKIKNFQDLKNQKEELKAEIKEIESVLSFENPRKSFGVITSGVTEKYLGGMMDSSLAQNAFFLADKFLFPSLEIGSAKLLSNALLKRVRPSMKKTLIGLGVAVLTPIVIMQIKKRLDHFQQRETAKSLSKLI
SRS014888_WUGC_scaffold_6531	SRS014888_WUGC_scaffold_6531__gene_6232	F098763	MDRRASLRILSTVLYLATKLFKAVVRTTISYDPSDEVEGKGGMNAIPTAVDE