7000000052: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 404239096

Overview

Basic Information

• IMG/M Taxon OID: 7000000052
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052517 | Ga0031291
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 404239096
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 125496045
• Sequencing Scaffolds: 24
• Novel Protein Genes: 25
• Associated Families: 23

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria → Neisseria sicca	1
Not Available	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	3
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030786	Metagenome	184	N
F032313	Metagenome	180	N
F042387	Metagenome	158	N
F043990	Metagenome	155	N
F046431	Metagenome	151	Y
F046432	Metagenome	151	Y
F047508	Metagenome	149	N
F051211	Metagenome	144	N
F051212	Metagenome	144	N
F057446	Metagenome	136	N
F061925	Metagenome	131	N
F063777	Metagenome	129	N
F064819	Metagenome	128	N
F071328	Metagenome	122	N
F072446	Metagenome	121	N
F077404	Metagenome	117	N
F080164	Metagenome	115	N
F084342	Metagenome	112	N
F085820	Metagenome	111	N
F094007	Metagenome	106	N
F097490	Metagenome	104	N
F103432	Metagenome	101	N
F103433	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C3017007	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	513
C3041294	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	596
C3041556	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria → Neisseria sicca	597
C3054022	Not Available	657
C3093981	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1029
C3097639	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1091
C3104310	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1233
C3105828	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1273
C3114693	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1578
SRS042643_WUGC_scaffold_16891	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	951
SRS042643_WUGC_scaffold_17039	All Organisms → cellular organisms → Bacteria → Proteobacteria	13515
SRS042643_WUGC_scaffold_18759	Not Available	1936
SRS042643_WUGC_scaffold_37724	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Alloprevotella	2742
SRS042643_WUGC_scaffold_45213	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2906
SRS042643_WUGC_scaffold_47985	Not Available	1066
SRS042643_WUGC_scaffold_54110	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	562
SRS042643_WUGC_scaffold_57256	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	854
SRS042643_WUGC_scaffold_57391	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	5309
SRS042643_WUGC_scaffold_57913	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	564
SRS042643_WUGC_scaffold_63277	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	6467
SRS042643_WUGC_scaffold_63504	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2111
SRS042643_WUGC_scaffold_63802	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1493
SRS042643_WUGC_scaffold_65003	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum	2536
SRS042643_WUGC_scaffold_9962	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	9663

Sequences

Scaffold ID	Protein ID	Family	Sequence
C3017007	C3017007__gene_159465	F051211	LPIMRVKKAIKVFEKIRDLPYGTSGSDEVWSCYQKCVLLKQELQHIGITSQLLIGVFDWQDLQIPEHILKIRRQQYERHVILRVFIDEFAYDVDPSIDIGLTPMLPMACWDGKSSTTTMVPLRRLRVYRPHSLHERILSQLRRKIFRSNPESFYTAIDIWLATIRVS
C3041294	C3041294__gene_168609	F084342	AKLFLLGGYLAIPICRPFFAQALKETLGQERSLGDAYDKDYQNEKALQWIHRHHILGICKEE
C3041556	C3041556__gene_168709	F047508	IGMLGHRLVEGRVKYPYLRNLGEYLRHGFDTEDVGWVVKRSELCALMEHIYYLWGDTYALCKALCTVYEAVTDGVDLIEGLYEVLFFENVEDNLYAACVVRNVKVALDLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQGGAATVEDQDFHKVLYYMVRCELIPSSP
C3054022	C3054022__gene_173570	F071328	MKWEFILEGEYIVEFVKLCKHLVLERTIAPKKHQAAAIYLRYSSQLLLKKRRAIRRLGIEKEYVSAILRQYGIHYREYGDNEHRVFFLDTGINLYFSKHDQSSIYIIQRIEFSN
C3093981	C3093981__gene_189744	F064819	MILKDSQGKDRIKFSDIVRLNKEEPVFVKMEVRISTETMVSEENLDIERSDLEDLTRNLKDLSECKIRKFFFQNIDETIEIVFSINDIGTIAVEGKMYDESYMNSINFSFQTDLNGIAIFSKEISQELEKYK
C3097639	C3097639__gene_191372	F061925	MSWEYSINLDSEESVSSVVTDLKICELFSSSTTDYIDWKNPKSIDDIPYDARFYTDKKKTIYIAINSFSKNIFSALKSILAKQNYHLTDCDTDEEVTLEHIFRSVI
C3104310	C3104310__gene_194277	F030786	MKRTKIHNVVFQMLVVMIVTGSLQLLLKNGSAAKGGSATGTKKISLADITGGDDSEIGVLKVKYFDDEGADKIFENNNNRILNTINSQHISYNSQSAEYSKPQLFLLYQSLKVDC
C3105828	C3105828__gene_194869	F043990	MIKKFGIIFIFGVIILGIAVYANHKIERSAIEREFGVNMSNMNIDEKYRKEEWAPNGDGEKTIILTYDQLDSSFTKLNKLPIKEDLPPNGIPEQFLNIANGYYKYVVDENDDRSFDILIVDTTRKEICIYYQIL
C3114693	C3114693__gene_198916	F063777	LKVLNIKISALPPENNSFWMKLLLYLCIPFLLIFGILLLIGWGIYSGISSIISAVKEDFFGIKDKTNIKTSKNILFENEQFKLKKEDYFPDENSQEYKIFDDFCAKSNEYLDDGYLFYKLTDKKSATDLNRAIISEFQEDIGDYILLQNLILEDNQLKNQLISFDKNTGKITVLTDIKDFFWLDFDSETKIINGYNNKEQIEIAISE
SRS042643_WUGC_scaffold_16891	SRS042643_WUGC_scaffold_16891__gene_23119	F046432	MWEMTESKLRNIISKYQLPMDDYLAEVDGAFGRGEFFWVIKNQSTNKKYLLVNTYSHHGVESELECYREGGFDNLEAIPRKIETLENASDAEDEISKYLFGMYSIFEMKS
SRS042643_WUGC_scaffold_17039	SRS042643_WUGC_scaffold_17039__gene_23320	F103433	MVFVMKEWSKNKPGVVFFFVVWFILSISFIGNFFGTGLWNGWFDGFQKDSSAIVEKTAYCKNKYDYKGPLIAADSKDYNKIMMSQDCNPSQVKPYVSQYGLQARVIAGLSPNDASKIPAYIKRVSIFLAVLTAFLLALVVQKIRVLFGGITASVFVVMLAFSPWIAGYARNIYWIEPMLIAPFVISFVGYQYFKKSKKLWLFYIIESVAMFLKLLNGYEYVSTIAISVLVPIIFFELVHKNVKIINLWKQAVPVFAATVVAFFGAYWVNFVSLTDYYGSSDKAASAINARASDRGISGIRSMRAYAVGNFKILRPETYNFINQLVNLDNMANNSGKTYKYIIVNVVNYLLLPAITLPVHINGMFGEFIQSILFWTILGYLIILSSRKIIGKKYSRPFLWSMNFSVIGAFCWLALMPGHALPHAHINGIIFYIPLLLFVYVLIGLWADYVVKRTVKYE
SRS042643_WUGC_scaffold_18759	SRS042643_WUGC_scaffold_18759__gene_25511	F080164	LCAAPQVTLRERASAFPLITEKDESEVDAPYAWRLPVVPLSLDNREIRNFAKYPLLPSLSGGKLTVRVLVVGDTVAVHRDLMDDFAKRCRTTLGLGVRTAPKLFGIKGMHVYGVQKDGSRQAVDEQVTLHLPGFEKAEKPLLYKGQTGRLVLCEYYDSHRGDLLLNAANARPEIFGELCPVIDFHFPVELRRAYAWLLLEIELEDGTKLSTSLQHYGEQTSILDHPARS
SRS042643_WUGC_scaffold_18759	SRS042643_WUGC_scaffold_18759__gene_25512	F103432	MKPINSLFSLSLLLALSGLFCTTACQDDAEPTQRTGLISTDSLIHAAEVYDGKAFEHVVSTTATGLRVSEPRRVVPMLPRQLHVTMDSTTMFRRHNLPSVSAYSLRVVAVGDTIYRQKESDAQFNADLDALFQQSIGIAPRLFGVRELSVLGIDRKGKPRDLGNYSCPLLQGKRRNVNYRTREGVFHEHYEAASVDTFSVKDDWLLKTKAEPSLYAPSFRLLVWEQPAEGCTKLRFTLTLVDGRSLVAEVPLY
SRS042643_WUGC_scaffold_37724	SRS042643_WUGC_scaffold_37724__gene_52391	F072446	MKKLLFLLSGLCLYCLAACDNDHEPTKPVRPFHGDTLAQIAWNFRFIVENHYHSIPGIVPEGTTYRVPVIPRSVEDRTEKEYNDMELGKEAHLVFRATVHGDTINRHKKELKALSLQLNRLTETSIGTSPVLCGVKSIEAVGIAENGNTYDLRGEMKLRIRDYSYRLKYPSGIITLDCENTESLTAKYVVPLGRIREYELAEHIQPELKFYLPVKRCMDFSSIRFAITLFNGEVLSFQHKLPSKSVLQELPNKSVLENYQQYGFIPESTYFTTCGLCLIISIMKGNCKRAIAQTF
SRS042643_WUGC_scaffold_45213	SRS042643_WUGC_scaffold_45213__gene_63612	F046431	MKIFKKITIVSILLIIMLTYTQTLVFAAESELTLTPKPETNNIHLKWTGPQNSSYKVFQKKPGATQFETIGLTDFSNTDEEVRVLNVYPVSIAEYNTPYVNVTYLDGTSEDIPKSALLKVWMEGR
SRS042643_WUGC_scaffold_47985	SRS042643_WUGC_scaffold_47985__gene_67749	F032313	MYRFLILLFAIPLIACDNNTPQEKPHEQEKHEVPVPVSKPQFDEVGERIWYGRTPAMRLDSTDYGAGLTSVFGMRTSSIPKQRFDSLFKQTVWEIKDIRVVETDLSLAKKNPGIMGWVTTTEFTCRNGVIVLHRQGINVNHVDTVNYVYDEVGNEIVLEGTGIRWSVLRLNKNAVEFLQRGRTMWGPFDWYYGRNSGRSEVTLEAK
SRS042643_WUGC_scaffold_54110	SRS042643_WUGC_scaffold_54110__gene_77392	F094007	VFCGVDYLWILWYNSYYMKSKTVEVLELARPNRAGVIDVVDSDGNVVPLDYLGEDFVPDANSYSDEDFTKRNRIIVEMCDLFGRIRRRAGFAERHRGRGDYDRARRIERNRGSDISEVGRLAISACEACPLKLDCELYGKLGGAVLSDVLDYKKVRTATSLTKAGKKRSGWNKGCIDNNA
SRS042643_WUGC_scaffold_57256	SRS042643_WUGC_scaffold_57256__gene_82867	F046432	MWEMTENELSEIISKYQMPEGRYSVVEEGSFGESEFFWVIKNESTNKKYLLMNTYSHHGVEAEAEYYREEGFDNLEAIPRKIETLENVSDAEDAIFKYLFGLYSIFEIKP
SRS042643_WUGC_scaffold_57391	SRS042643_WUGC_scaffold_57391__gene_83125	F085820	MKSTFYLFAILFLVTTFFSCETVEPSPRATWGEIVNPIEAFMYPRDLKVFADGEEGRRWLILVIPDSTKSSFAPTSKSTPAEVARYKELSQLVGNPTEPVVNECNFRRTWLTQGVKAIRVVRTQADGRDEEVTAQCGNLYFYTDKQIFDCQFKCGDRSIFAKPLGETVEADYLWLPGRDVFGLIAPPNPDHLKQRIVLRLADGTEIEKELSDKRKK
SRS042643_WUGC_scaffold_57913	SRS042643_WUGC_scaffold_57913__gene_84103	F057446	MNSISFGKTTITSYPEYFEIADNKKTSKLLYLSASFVFIAIYLFDLYQNDFDFGKVAHFKTISAVLWLVIFALQFWLINTESKIEKSKIKEIVVRKNRWASIVIHYGDKKRKIDGFSQDEAEQIIKFLMNNR
SRS042643_WUGC_scaffold_63277	SRS042643_WUGC_scaffold_63277__gene_95659	F077404	MAQQIIMTHKLAAAALSLKEPTQIGNTQNPFAMNTLKTIFTCFFTLCFMMVANSYAQKTDSINTEAGKSVLQRNAIYIPPALEQYADTALLHQRFNVENKGNYLYTPFTEDNEPTIPFNYGFLHPLGERFYNCFMGKVDRILRPKADKGFIILTSYLVVLGDSYAFDTSNKDTSKLADLKYLDFRHIKRDFSYGHPYQGFTPNDRIELSNFVQSYGRQAALETANAWVMASYPFSLQSTKFENRYTRGRKLILTDGHSTLYLYFLMIDSVAPNFDTEVLPYIKGVFRFNRFR
SRS042643_WUGC_scaffold_63504	SRS042643_WUGC_scaffold_63504__gene_96259	F051212	MKKFFFIFVLYWLHSCNGTEKAMPTSPDTQKTSISEKQNAEKIERIIYSQTGGDTGGKNVHLVITKDSIIYHLTEDVTDEKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSKELIMDLPTTKIIIKTNKKEYSKTNIQNNKTWDYITKQIIDIKYSQLNNHLNLEK
SRS042643_WUGC_scaffold_63802	SRS042643_WUGC_scaffold_63802__gene_97189	F042387	MKRIILFFMTGLFLVSCSRENDKMTDETLANSAKMQLPTKVTIAENKKVISKRFEYQNDNELKEIIDEGSGERIVFVYEKDFITSKIRYSQAGEELGKANYQYNNGKLSSVIDEVVISDSGIQYKRVVTREYHYNGSEVSVNENIKYHSESYAYNLRDENFTHTYVLNGENITKIHHEISKNVPGGHFYLNPNNMVVVDEEVTYDAKNSPYKNIKGFSVLAVEFCGLDEDENTIADYLNFRWVSHNPALIQKSTNLYGSGADSSE
SRS042643_WUGC_scaffold_65003	SRS042643_WUGC_scaffold_65003__gene_100802	F097490	MELDEEKKEVLVEIRNNTENNYYLLSPIVSIMTKHLQDIGGEMIEGQIHHKKLDSIVCSVCIWDDICKEEYYAMRDIVLLPKKSVKKIKYKYDNEEYIEIETVHIGFPYNGYYNEIGKKMQFMLKKKLDSSNIIKGYEFYNKDIETMTIKM
SRS042643_WUGC_scaffold_9962	SRS042643_WUGC_scaffold_9962__gene_13856	F046431	MLTYTQILVFAAESELTLTPKPETNNIHLKWTGPLNSKYRVYQKKPGSSNFETIGLTDFSPEAIDEEVKVLNVYPHSKNVGRLWPGSTAFQSLPMVNVTYLDGRTETIEKSALLKVWMEGRNIK