7000000048: Human supragingival plaque microbial communities from NIH, USA - visit number 1 of subject 675950834

Overview

Basic Information

• IMG/M Taxon OID: 7000000048
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052513 | Ga0031103
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit number 1 of subject 675950834
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 71365669
• Sequencing Scaffolds: 22
• Novel Protein Genes: 25
• Associated Families: 24

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	7
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F042387	Metagenome	158	N
F043991	Metagenome	155	N
F047127	Metagenome	150	N
F051214	Metagenome	144	N
F054111	Metagenome	140	N
F057446	Metagenome	136	N
F059076	Metagenome	134	N
F061925	Metagenome	131	N
F061926	Metagenome	131	N
F061927	Metagenome	131	N
F063777	Metagenome	129	N
F064818	Metagenome	128	N
F067847	Metagenome	125	N
F070224	Metagenome	123	N
F071327	Metagenome	122	N
F077405	Metagenome	117	N
F081454	Metagenome	114	N
F085821	Metagenome	111	N
F089056	Metagenome	109	N
F097490	Metagenome	104	N
F097525	Metagenome	104	N
F101360	Metagenome	102	N
F103434	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2283665	Not Available	543
C2295961	Not Available	609
C2328125	All Organisms → cellular organisms → Bacteria	948
C2331292	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1020
C2336274	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1170
C2336888	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1193
C2345702	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1741
C2348392	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	2123
C2351078	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	2965
SRS055401_LANL_scaffold_24410	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	4115
SRS055401_LANL_scaffold_28444	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1769
SRS055401_LANL_scaffold_33675	Not Available	642
SRS055401_LANL_scaffold_34972	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	14409
SRS055401_LANL_scaffold_37133	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	40843
SRS055401_LANL_scaffold_37543	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum	1913
SRS055401_LANL_scaffold_38839	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	4138
SRS055401_LANL_scaffold_40310	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	1529
SRS055401_LANL_scaffold_41324	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1324
SRS055401_LANL_scaffold_41457	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum	1378
SRS055401_LANL_scaffold_41505	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	4073
SRS055401_LANL_scaffold_41570	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1778
SRS055401_LANL_scaffold_9796	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	8320

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2283665	C2283665__gene_102817	F070224	GEPIYLLASPLRPVKPRGSKKRTRDWVKVDFSDENNIIIVNAGDPLVIENFFAYYAAEFPKMKEYELYYKGTGEEITKEDFDSIKFTRMPTALREIKKYKLPRTRRTLREVDRWQHPHLFVIEHDKKASRYYKYRIALVIYIDYHHPEAYTVH
C2295961	C2295961__gene_108013	F085821	EQLAPLAETKKQQTTVAKFIEKGFKFTRQPDAQKFTFLVYDFFVAGNMPAVQLCIDYLVAQAYPTAENKKKFLNWIFMEPVYYLKYFISDASTQKKLHHDLLNLWYESNKRLLLEQDKGKHDEAYINAWNEANVNKTLSIIRSGETIASCKEDVVELAESLNDEYELNISLLDEYCRALLYTAETTESQQELVAETQNHIAL
C2328125	C2328125__gene_122597	F054111	MNKSLESITHEEFLKLMERLKNLQEFTFLEYIMAPEADIFYFNFMEKTVKIKWDLDYGLFLETESLSTADRDLFLNILDKEILFLI
C2331292	C2331292__gene_124094	F057446	MNSISFGKATITSYPEYFEIADNKKTNKLLYLSASLVFIAIYLFDLYQNDFDFAKVSHFKTISAVLWLVIFALQFWLINTESKIEKSKIKEVVVRKNRWASIVIHYGDKKRKIDGFSQDEAEQIIKFLMNNR
C2336274	C2336274__gene_126619	F081454	MKAFKFILLLFITSASLVFGQEKRYFFKYEYLPNSKYLIKYKIDMDGGYKFVGNKEVLDKIGMDGVKMTINSDIESTFSTQKKQGENVPFILEYTKYFYEAEINGEKVNRKIPIQGVKLSGDIINGKKMEVKNVEGNIDEDTKKILIESIKQFSAIDTDFPKEGLKIGDSFDMVIPYKQSIPNAGDIEMKMNVKYKLLKVEKEEAYFDILIDFVMGDKNVKNMDLSASGDGKGFLLFDMKNNYFTNQNLDMTINLKLKTELLTLENTSKAKSIITQQKIK
C2336888	C2336888__gene_126907	F063777	LKVLNIKISALPPENNSFWMKLLLYLCIPFLFIFGILLLIGWGIYSGISSIISAVKEDFFGIKDKTNIKTSKNILFENEQFKLKKEDYLPDENSQEYKIFDDFCVKSNEHLDDDGYIFYKLTDKKSATDLNGAIISEFQEDIGNYILLQNLILEDNQLKNQLISFNKNTGKITVLADIKDFFWLEYDSETKTINGYNNKEQIEIAISE
C2345702	C2345702__gene_131703	F097525	MQQKKIMFKIQNAYQKIIFSIHGHRDRKDNFEDWLKVEVKVKDDLEGKYYTRVSECMLFSEVLDLLEWFEQISANQEKPAEIGFIEPELAFEYQNKKLIVLLCYDIAPVSYGEEPYELTFPLDDKTLAMIIKELGEAVTSFKKQ
C2348392	C2348392__gene_133403	F061925	MSWEYSINLDSEEAVSSVVTDLKICELFSSSTTDYIDWKNPKSIDSIPYDAKFYTDKKKTIYIAINSFSKNIFSALKSILAKQNYHLTDCDTDEEVTLEHIFRSVI
C2351078	C2351078__gene_135237	F059076	MTNRILLLGLLLGGVSINAQNINETNAAGKTGQKVGINTTIPTRTLTIKNSTANDGKPLLRLVDAPIYSKNIRSDMDADLGGNTATTTNYTDYRPLVVDKVGDVYKGLPIHNMSILTLTIDKVNGDYIRKFDTGIDYNKYAVAIMSYSFKMPAPASGGIVMLRGGSNTPSVAHGGNKYGVTTAPATVLLTKTGSNWGIYADYPNIGSYEFTSGSTAIGNLVDGTWVITLLVGKRDAVNFTEIKFDQNGQPEGIGPNNTTYTTQLDNFLKKLE
SRS055401_LANL_scaffold_24410	SRS055401_LANL_scaffold_24410__gene_24771	F061927	MKNSIFILSAIFILGACSSDSAQKVTEKIKNAYSDGLRKTFIEEGVKSCIENSGLKESEAREYCECAMNKLNESLSNDEIVDISMDNPPKDLDERVDKAIDSCIGE
SRS055401_LANL_scaffold_28444	SRS055401_LANL_scaffold_28444__gene_30003	F047127	MKKTFAFILLSIISLAKAQLTEIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERREAVRLWDKDIFYLEFTDRKMNKRVFRQMPELKKNGKLFEIMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIVNIPVKGRYKKKLKALLSDKPEIAKEVDRMVGDRDIREILEKYNSK
SRS055401_LANL_scaffold_33675	SRS055401_LANL_scaffold_33675__gene_37116	F077405	LPTELFPRLLVAKQRGVFYGFILLCQIKFVKKFFDWLKIIQK
SRS055401_LANL_scaffold_34972	SRS055401_LANL_scaffold_34972__gene_39082	F067847	MFSHIIRVRGIFDDEPTTKKLYFHMSRREMFDFIKRYDNVTNFEKWLQAAIDNEDLYAMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPSLVREFYNGILPEKIMKQVQQDPKYKELDNKLKETELNNL
SRS055401_LANL_scaffold_37133	SRS055401_LANL_scaffold_37133__gene_42528	F103434	VVGFRPRRGRYLENGPHVVEVTLAVVKEGRTGRRFERGETFVVDKVLVQPSAGNALKATENRVIRGGLTDETTLKVFGTGRKWPGGPHSWVKIIKGPESLVGKTFQQAGEPLTYDASPMTRHWSVRCDTLGTESR
SRS055401_LANL_scaffold_37133	SRS055401_LANL_scaffold_37133__gene_42556	F101360	VSKENALRKAAIAAHIAKVASQEKKKALKELEEYMAPGDTSKPMIDGLQVGTVSVSAPQPRYQVVDEKALVAWLEWNKPDAVHKVPAPWFVAAAALDGFIKQTGEVPDGVEVVQGDPRISVRISGAQEEAIRELISTGDISLIEIEGGDA
SRS055401_LANL_scaffold_37543	SRS055401_LANL_scaffold_37543__gene_43248	F071327	KMEELFNSVYSTHKGISFSTVVVFGAFIFLLLQAHLSYKGAVSDVLRKTSFFSMMLLYVQGILGVFLGIYSPEFSEVSGFSSFLKHFEYGISILLCAGMMTYVYKYIKNNKQLSLKIVVIALVAALLFEYAYPWRIIFG
SRS055401_LANL_scaffold_38839	SRS055401_LANL_scaffold_38839__gene_45571	F061926	MMIKTAKHIKTFLASVLLLIFVMNVSGFFVRLHHQETHQKTEKIAECSDKVCYHKAHLQTKNDCDCGFLCTLNYFYILPEKPLTEIHVNEYFSYFSSYKIFVSERIILLWQSRAPPVFS
SRS055401_LANL_scaffold_40310	SRS055401_LANL_scaffold_40310__gene_48355	F054111	LEKENMNKPLDNITHEVFLKLMEHLKNLQELTFLEYIMAPEADIFYFNFMEKTVKIKWDLDYGLSLETKSLSTSDKDLFLNILHKEILSL
SRS055401_LANL_scaffold_41324	SRS055401_LANL_scaffold_41324__gene_50495	F064818	MNKDEFLKELIAFIADNSSELHPKVFKNKIRFGINKNSYTEMRFDYSQNYKGFYLQLASYNKDVGDFFEQEMGNAFLKMLEDESKEFRNLFFVQNSFQISHYYYGFPIMTNDNTGHLYPEMGTTIFNDVLRNLQANHFKFIQAAEVLSPDLLHYIKRFPSCFFNTALVALLIIEKNLLSLDDERVQGLFEYDNMVTKNECKLFSPFDLIF
SRS055401_LANL_scaffold_41457	SRS055401_LANL_scaffold_41457__gene_50813	F097490	MKIDENKKEVLVEIRNNTENNYYLLSPIVSIMAKHLQYIDGEMIEGQIHHKKLDSIVCSVCIWDDICKEEYYAMRDIVLLPKKSVKKIKYKYDNEEYIEIETVHIGFPYNGYSNEMGKKMQFMLKKKLDSSNIIKGYEFYNKDIETMTIKM
SRS055401_LANL_scaffold_41505	SRS055401_LANL_scaffold_41505__gene_51026	F042387	MKRIILFFMAGLFLISCSRENDKMTDETLANSAKIQLPTKVTIAENNKVISKRFEYQNDNELKEIIDEGSGERIVFLYEKDFITSKIRYSQAGEELGKTNYQYSNGKLSSVIDEVVISDSGIQYKKVVTREYRYNGSEVSVNENVKYHSESYAYNLRDENFTHTYVLNGENITKIHHKISKNVPSGHFYLNPNNMVVIDEEVTYDTKNSPYKNIKGFSVLAVEFCGLDEDENTIADYLNFRWASHNPTLIKKSINLYGSGADSSEYKFQYEYKNNFPIKTKLNIDNQIVTTMVYEYNK
SRS055401_LANL_scaffold_41570	SRS055401_LANL_scaffold_41570__gene_51177	F089056	LLCIISCSKRKEADNTMVLEKNHAFSLWNNDSLGCKHERTIEMGEELYNTFKKSNKNDSILLKEYLGTPNRRFKDKEEIVFMYYINSCCDNGQLLEECDVSFISITFTNKNKILFGKGIQ
SRS055401_LANL_scaffold_9796	SRS055401_LANL_scaffold_9796__gene_8246	F043991	VSKKNPSVIDYFDLNGDLNEEAYEFEDVKLDEYIDKRSNVKPSWIGKYSHQMHFDLPDDTEVSFYKGLNIVYADINFAGGIRTILFKCRQKKNLTRFISRVLEIAQGSPSNVHPDFRA
SRS055401_LANL_scaffold_9796	SRS055401_LANL_scaffold_9796__gene_8247	F051214	MPGKIVANDTHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYVYNNREYQIACEFLRQVMHDKIDLKDEWI
SRS055401_LANL_scaffold_9796	SRS055401_LANL_scaffold_9796__gene_8249	F018385	MADLINSWLPYQELSIDKDRDPVTDDEIIYGSNVKHFTLTVYSPEGRVNKYWNARILKDQVGYCRVACPREKKILCFNWVNWTAYMFTHDGLNELVFMPDARRRTVSQLSFDHVPMKEVK