7000000036: Human stool microbial communities from NIH, USA - visit 2 of subject 765074482 replicate 2

Overview

Basic Information

• IMG/M Taxon OID: 7000000036
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052500 | Ga0030577
• Sample Name: Human stool microbial communities from NIH, USA - visit 2 of subject 765074482 replicate 2
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 144433271
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055775	Metagenome	138	N
F062845	Metagenome	130	N
F068811	Metagenome	124	N
F076064	Metagenome	118	N
F076190	Metagenome	118	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
SRS049164_WUGC_scaffold_23651	Not Available	31723
SRS049164_WUGC_scaffold_62910	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1157
SRS049164_WUGC_scaffold_82777	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1328
SRS049164_WUGC_scaffold_84180	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	657
SRS049164_WUGC_scaffold_90366	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1682

Sequences

Scaffold ID	Protein ID	Family	Sequence
SRS049164_WUGC_scaffold_23651	SRS049164_WUGC_scaffold_23651__gene_32680	F055775	LVIEVATTAAALDGDTKKKLIECIEGGTITDVILVTKEVEKKISHARVVSWLVDTTGDSPKYTIDIIDAKSGAVEAIALN
SRS049164_WUGC_scaffold_62910	SRS049164_WUGC_scaffold_62910__gene_101413	F062845	HEKFRSDNNEQRKERFQKEFERYIIDGLLNAVPSRSCA
SRS049164_WUGC_scaffold_82777	SRS049164_WUGC_scaffold_82777__gene_142614	F076190	GGWNGRSSWARTAGGSITIFVKNVFTAASRVLGCVWSLVRITIPNGLKYVKIGVEKPQNNSLYPYFQREPL
SRS049164_WUGC_scaffold_84180	SRS049164_WUGC_scaffold_84180__gene_145740	F076064	LKKTTPGRALENLFYLQYDLPPEASFHATTEEAKRPDELYMRKLLPELTRLKLQPRHVVANDEAYYAVMKGVMLFTPEAEKLMLTEDYFSVRRQIRLCA
SRS049164_WUGC_scaffold_90366	SRS049164_WUGC_scaffold_90366__gene_159994	F068811	MDQDESEHNICSNREGLCPGKEQHGASGWKKIFQHGKEPLRNKDSVSQYCNKKVAVSVILNENVSETLCIFSIDKTNCCRI