7000000016: Human supragingival plaque microbial communities from NIH, USA - visit 2 of subject 158802708

Overview

Basic Information

• IMG/M Taxon OID: 7000000016
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052480 | Ga0031078
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 2 of subject 158802708
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 58966414
• Sequencing Scaffolds: 15
• Novel Protein Genes: 21
• Associated Families: 21

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	3
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → unclassified Chryseobacterium → Chryseobacterium sp.	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → Viruses	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → Saprospiraceae → unclassified Saprospiraceae → Saprospiraceae bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus influenzae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F022002	Metagenome	216	Y
F027205	Metagenome	195	N
F030786	Metagenome	184	N
F036281	Metagenome	170	N
F043991	Metagenome	155	N
F051214	Metagenome	144	N
F057446	Metagenome	136	N
F059076	Metagenome	134	N
F061926	Metagenome	131	N
F063777	Metagenome	129	N
F067846	Metagenome	125	Y
F067847	Metagenome	125	N
F071329	Metagenome	122	N
F073671	Metagenome	120	N
F076191	Metagenome	118	N
F080165	Metagenome	115	N
F081456	Metagenome	114	N
F089056	Metagenome	109	N
F090516	Metagenome	108	N
F105377	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
C1255396	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	501
C1303016	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1314
C1313353	All Organisms → Viruses → Predicted Viral	3697
SRS023538_Baylor_scaffold_12788	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → unclassified Chryseobacterium → Chryseobacterium sp.	1597
SRS023538_Baylor_scaffold_16915	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1606
SRS023538_Baylor_scaffold_17306	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	804
SRS023538_Baylor_scaffold_18062	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	2171
SRS023538_Baylor_scaffold_31991	All Organisms → cellular organisms → Bacteria	1193
SRS023538_Baylor_scaffold_33688	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	6801
SRS023538_Baylor_scaffold_34407	All Organisms → Viruses	10462
SRS023538_Baylor_scaffold_37188	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	3281
SRS023538_Baylor_scaffold_37459	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → Saprospiraceae → unclassified Saprospiraceae → Saprospiraceae bacterium	817
SRS023538_Baylor_scaffold_37560	All Organisms → cellular organisms → Bacteria	1136
SRS023538_Baylor_scaffold_38605	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1271
SRS023538_Baylor_scaffold_41056	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus influenzae	1455

Sequences

Scaffold ID	Protein ID	Family	Sequence
C1255396	C1255396__gene_87983	F080165	NKKDKIMKNKKFILGILLSLTACNNKTKTISTLDLEKTIIDYKDLPSKVKERVFYGEAMKLGEEDEERFQDFQETNNPKKYEYYTKHDPLLAWVHAPYIRNKKTKQEYSIDKDGPMGGRYIIYGDSLYISNHYNIYEEDSLRYTFTRYILR
C1303016	C1303016__gene_101074	F018385	MMAEYENQWGPYKEHSIEKDRDPVLDDPIIYGVNVKHFTVTVYSQDGRVNKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTAYMFTHDGLNELVFMPGSSRKTISRLYHEEVK
C1313353	C1313353__gene_103925	F067846	MESLQAQWERKTFNDWDKQCSKEDDYNRAVEMEIESIKEDIANCDSDTLCAFSEKMFDDDEFLKAVALGTDYEEMRIKILTAMAEDRLEQLEKDYKNGYILNDYSKG
SRS023538_Baylor_scaffold_12788	SRS023538_Baylor_scaffold_12788__gene_16186	F063777	LKVLNIKISALPPENNSFWMKLLLYLCIPFLLIFGILLLIGWGIYSGISSIISAVKEDFFGIKDKTNIKTSKNILFENEQFKLKKEDYLPDENSQEYKIFDDFCAKSNEHFNDDDGYIFYKLTDEKSATDLNGAIISEFQEDIGNYILLQNLILEDNRLKNQLISFNKNTGKITVLADIKDFFWLDFDSETKTINGYNNKEQIEIAISE
SRS023538_Baylor_scaffold_16915	SRS023538_Baylor_scaffold_16915__gene_21982	F061926	MIKTAKHIKTFLASVLLLIFVMNVSGLFVRLHHQETHQKTEKIAECSDKVCYHKAHLQTKNDCDCGFLCTLNYFYILPEKPQTEIHVNEYFSYFSSYKIFVSERIILLWQSRAPPVLS
SRS023538_Baylor_scaffold_17306	SRS023538_Baylor_scaffold_17306__gene_22537	F030786	MLVVMIVTSSLQLLLKNGSTTKGRNAMGTKKISLADITDGDKSKVVAIKVKYLDDDGADKIFESNNNRILNTINSQHISFNSQSAEYSKPQLFLLYRSLKVDC
SRS023538_Baylor_scaffold_18062	SRS023538_Baylor_scaffold_18062__gene_23761	F090516	MKSNLSLKLFLAFERYFIENDEVISLDKSSEFTDVIVGIGFLPQDMSENTDFKKKTLEKYGFSSSTALADDFRKRVLNIDEPIPENFEKDGVGYVYTVISGYDTFYNRMYMFGIHCFNGDFNVTYYDLDNDVETGDYYEEHELYSQAKGYRWLDPESDYYEDVLAWEALNKLATDIYFHLEDKLDVKIDIKPIPEEEKVVPTQEHLAKFLAFCGVEQEVIDENKERLLKALEEYTPDEYEGVSEAMAEMMEYSHKIQRAEPVIEIIREYGVCRFSDWKFYAEELEEYILDLADFSDWKWEYPADTYSADLFPYMRKQLSQYHLWLCHLDEGADAYLFLLFSEKDMPEIMKLARILDLPLKAYFK
SRS023538_Baylor_scaffold_27087	SRS023538_Baylor_scaffold_27087__gene_37513	F022002	GKIEETQAGSNDVDYTVTGLNYARRSTKTVYMFFYKGHLRRIVFIFNDLDVLEQIESELENKYGTMAEGVGTSKMKSKVVFDAFTRLWVVRGFKYEGHFGFKDAYITYSDEELDRARSAEKESEI
SRS023538_Baylor_scaffold_31991	SRS023538_Baylor_scaffold_31991__gene_45283	F089056	KIILPLLCIISCSKRKEADNTMVLEKNHTFFLWNNDSLGCKHERTIEMGEELYNTFKKSNKNDSILLKEYLGTPTRRFKDKEVIIFMYYINSCCDNGQLLEECDVSFISITFTNKNKILFGKGIQ
SRS023538_Baylor_scaffold_33688	SRS023538_Baylor_scaffold_33688__gene_48211	F081456	LGYRLFLEKGAYMFEEPPIYYILISLIFLIVFGAISFATWMVWLTSIAFFAKLVVTAIGFLLCAMTVILYTISAE
SRS023538_Baylor_scaffold_33688	SRS023538_Baylor_scaffold_33688__gene_48215	F067847	MFSHIIRVKGIFDDEPTTKKLYFHMSRREMFDFIKRYDNVTNFEKWLQAAIDNEDLYTMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPALVREFYNGILPEKIMKQVQQDPKYKELDSKLKETELNNL
SRS023538_Baylor_scaffold_34407	SRS023538_Baylor_scaffold_34407__gene_49463	F105377	VRDFENLPLLTPEEALERAREMGWNRPLFDHGYRVRGLEAWKALETLIRQYDVEDLVIASFGLKGIEEIFDACAMLHERGWRLWQTTAKVYVGGELRTVQAIRAHYRGY
SRS023538_Baylor_scaffold_37188	SRS023538_Baylor_scaffold_37188__gene_54576	F036281	MFSLIRVSEGPVDIHELRSRYLGKLKTEDGVMLPTFIYRNKDLFITEFKPTCDDQWIMYMTNSEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAQEYYDYWTAREGRPAPFFYESRQYHVKSFMRVPGSTDLWITAERETGHWYTFRMSDDQKSKFTRHTITNEKGHQSYDWVLKNVEWAADTIRYF
SRS023538_Baylor_scaffold_37188	SRS023538_Baylor_scaffold_37188__gene_54577	F027205	VASRLIVSADDILKAVKESEEFERKALSEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFVVDVSQVRNRDLADEIEKDLFAFMDYLLDEYDIPRRIKK
SRS023538_Baylor_scaffold_37188	SRS023538_Baylor_scaffold_37188__gene_54580	F043991	MSKKTPSVIDYFSLNGDVVEEANEFDGISLEDWIDKRSSIKPSWVGQYSQQMHFDLPDDTEVSFYKTPNVIYADILFAGGVRTILFKCRQKKNLTRFISRVLELANLGPKHVHPDFRA
SRS023538_Baylor_scaffold_37188	SRS023538_Baylor_scaffold_37188__gene_54581	F051214	MPGKIVAHDTHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQVMHDKIDLKDEWI
SRS023538_Baylor_scaffold_37188	SRS023538_Baylor_scaffold_37188__gene_54582	F071329	ASETKGNMRPLYSKGILMLPVAKIIISGLTSIGAGMIASKLTKPLVSNANGIAKILLWFGSVGTGVAASAIVAREVELQFDATVKAVQEARDHVEIED
SRS023538_Baylor_scaffold_37459	SRS023538_Baylor_scaffold_37459__gene_55119	F057446	MNSISFGKTTITSYPEYFEIADNKKTNKRLYLSASLVFIVIYLFDLYQNDFDFAKVSHFKTISAVLWLVIFALQFWLINTESKIEKSKIKEVVVRKNRWTSIVIHYGDK
SRS023538_Baylor_scaffold_37560	SRS023538_Baylor_scaffold_37560__gene_55315	F076191	LWRIKALSNELVNQDNRCTSMPVWTILDNNKAGKDYGAVMYFTGKAAEQHINENDHHYENPTTCIRSAHDNRELKDVIHLLILAGGNEIPSNHYGVLRDA
SRS023538_Baylor_scaffold_38605	SRS023538_Baylor_scaffold_38605__gene_57521	F059076	MTNRILLLGLLLGGASINAQTINEINAAGKTGQKVGINTTIPTRTLTIKNSTPNDGKPVLRLVDAPIYSKNVGSAMDADLGGNTATSTNYLDYRPLVVDKVGDVYQGLPINNMSILTLTIDKVNGDYIRKFDTGIDYNKYAVAIMSYSFKMPAPASGGIVMLRGGSNTPSVDHGGNKYGVTTAPATVLLTKNGSNWGIYADYPNIGSYEFTSGSTAIGNLVDGTWIITLLVGKREAVNFTELNFNQGRSAEGVGFSDQTYKTGMENFLKKLE
SRS023538_Baylor_scaffold_41056	SRS023538_Baylor_scaffold_41056__gene_63404	F073671	MTNNKQAEHELAELHEKERSLEKALELVRERIRELVNYTDKNKEQK