7000000014: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 160603188

Overview

Basic Information

• IMG/M Taxon OID: 7000000014
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052478 | Ga0031046
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 160603188
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 40118741
• Sequencing Scaffolds: 17
• Novel Protein Genes: 19
• Associated Families: 19

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	3
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cytophagaceae → Spirosoma → Spirosoma linguale	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Kingella → Kingella oralis	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030786	Metagenome	184	N
F036281	Metagenome	170	N
F040149	Metagenome	162	N
F042387	Metagenome	158	N
F043235	Metagenome	156	N
F045567	Metagenome	152	N
F047127	Metagenome	150	N
F047508	Metagenome	149	N
F051212	Metagenome	144	N
F053092	Metagenome	141	N
F055792	Metagenome	138	N
F058221	Metagenome	135	N
F059076	Metagenome	134	N
F064818	Metagenome	128	N
F071329	Metagenome	122	N
F080165	Metagenome	115	N
F094006	Metagenome	106	Y
F097490	Metagenome	104	N
F101359	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2706055	Not Available	527
C2708305	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	544
C2721599	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	684
C2733731	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1016
C2742862	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	3708
SRS017814_Baylor_scaffold_12808	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1555
SRS017814_Baylor_scaffold_15982	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	671
SRS017814_Baylor_scaffold_1972	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cytophagaceae → Spirosoma → Spirosoma linguale	1720
SRS017814_Baylor_scaffold_21334	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	4192
SRS017814_Baylor_scaffold_23242	All Organisms → cellular organisms → Bacteria	2240
SRS017814_Baylor_scaffold_25013	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2529
SRS017814_Baylor_scaffold_27616	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	3839
SRS017814_Baylor_scaffold_27737	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	4332
SRS017814_Baylor_scaffold_28070	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1689
SRS017814_Baylor_scaffold_28316	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	745
SRS017814_Baylor_scaffold_28730	All Organisms → cellular organisms → Bacteria	5258
SRS017814_Baylor_scaffold_9251	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Kingella → Kingella oralis	788

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2706055	C2706055__gene_65864	F097490	FLKTQKMNKKMNVFCKIILPLLCIISCSERKEIEVYNMKIDENKKEVLVEIRNNTENNYYLLSPIVSIMTKHLQYIGGEMIEGEIHHKKLDSIVCSVCIWDDICKEEYYAMRDIVLLPKKSVKKIKYKYDNEEYMEIETVHIGFPYNGYYNEIGKKMQFMLKKKLDSSNIIKGYE
C2708305	C2708305__gene_66849	F080165	NNKTKTISTLDLEKVVINYKELPAPVKKKVFPPNNGLITFGEENREEYESFQETNNPKKYEYYTKQDPQLAWVHAPYIRNKKTKQEYSIDKDGPMGSRYIIYGDSLYISNHYNIYEEDSLRYTFTRYILR
C2721599	C2721599__gene_72775	F071329	MLPVAKIILSGLTSIGAGMIASKLTKPLVSNSSGIAKILLWFGSVGTGLAASAIVAREVEKQFDETVAAVKEARDHIEIED
C2733731	C2733731__gene_78679	F042387	MAGLFLISCSRENDKMTDETLANSAKMQLPTKVTIAENNKVISKRFEYQNDNELKEIIDEGSGERIVFVYEKDFITSKIRYSQAGEELGKTNYQYNNGKLSSVIDEVVISDSGIQYKRVVTREYSYNSSEVLVNENVKYHSESYAYNLKDENFTHTYVLNGENITKIHHEISKNVPSGHFYLNPNNMVVIDEEVTYDAKNSPYKKIKGFSALATEFCGLDKDENTIADYLNYRWVSHNPTLIKKSINLYGSGADSSEYKFQYEYKNNFPIKTKLNIDNQTITTMVYEYNK
C2742862	C2742862__gene_84185	F045567	MVTEDVVHTSTHRVEDALLPVDGDILTPRDGTHIVQTERVVVVLVSQEDSIDTIDTETCGLVVEVRATVNEDTLPTLGDDEGRGAQTTVTSIRAMAHWAATAYLGDTSAGARTEKNYLHVSRRESYHGKEIPSLSSERGCVVERVVR
SRS017814_Baylor_scaffold_12808	SRS017814_Baylor_scaffold_12808__gene_13022	F058221	MKNKMGKIKNFQDLKNQKEELKTEIKEIESVLSFENPRKTLGVITNGVTEKYLGGMMDSGLVQNASFLANKFLLPSLEAGSAKLLTNALLKRVRPSMKKTLIGLGVAVLTPIIIMQIKKRLDNFQQRETAKSLSKLI
SRS017814_Baylor_scaffold_15982	SRS017814_Baylor_scaffold_15982__gene_16574	F036281	DIYELRMQYLAKLKETDGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNAEGLITKMRVKNGDLMSNGSVLFLAEERKIYNAKEYYDYWSAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAERETGHWYTFRMSDAQKSKFTRHTMTNEKGHQSYDWVLENVEWAADTIRYF
SRS017814_Baylor_scaffold_1972	SRS017814_Baylor_scaffold_1972__gene_2021	F030786	MKRTRIHKVVFQMLVVMIVTSSLQLLLKNGSATKGGNAMGAKKISLTDIVDGDDSETGVLKVKYFDDGADKIFENNNNRILNTINSQHISYNSQSAEYSKPQLFLLYQSLKVDC
SRS017814_Baylor_scaffold_21334	SRS017814_Baylor_scaffold_21334__gene_22955	F053092	MQSDQGLILCLTHALLVLGALILEPAEMEDTMDDHAVQLFSVLIAKELGIATHRIKTDEHVPRDHIPLTLIEGDDIGIVVMIKEVLIGLQDALITTELVAELADTAVIAGSDLTDPVAKDTLSEARLLDVFVSIVSYKLRFFRHK
SRS017814_Baylor_scaffold_23242	SRS017814_Baylor_scaffold_23242__gene_25439	F040149	VADEGAEELRWEVLIKEQSIPVLFVEVEAWYDGRVSSSEILGSVGIALEREPRLAPVWSHDSKDAIDYFIYDTSVPKGHALTAVRERETVVAQLLNIHRMF
SRS017814_Baylor_scaffold_23242	SRS017814_Baylor_scaffold_23242__gene_25440	F055792	MEIASQALDSTPAVAHRILLLTTQLGESLLASFGAEDGVITEAMVTRALESNLSIDSTLEEVGPVLIDKGDDGTEAGTTWGRYPLETLQKEGYILFEGSMLTCEARRVDSRSSIKSLDLESRIIGKAMKPVALPHVARLDEGIPLQRIGGLGDLLVTPDVSQADDL
SRS017814_Baylor_scaffold_25013	SRS017814_Baylor_scaffold_25013__gene_27963	F047127	MKKTFVFILLSIISLAKAQQTEIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERREAVRLWDKDIFYLEFTDRKMNKRVFRQMPELKKNGKLFEIMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIVNIPVKGRYKKKLKALLSDKPEIAKEVDRMVGDTDIREILEKYNSK
SRS017814_Baylor_scaffold_25013	SRS017814_Baylor_scaffold_25013__gene_27965	F051212	MKKFFFIFVLYWLHSCNGTEKVNADTIKTSIFEKQNTEKIERIIYSQTGGDTGGKNVYLVITKDSIIYRLTEGVTDEKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSKELIMDLPTTKIIIKTDKKEYSKTNIQNNKTWDYITKQIIDIKFSQLYNHLNLEK
SRS017814_Baylor_scaffold_27616	SRS017814_Baylor_scaffold_27616__gene_32175	F094006	MRGTLESAGPTGALHEPAVSVEAHIGELQAGGIACRGLFAFGGSNLLAVAELGAEAPHAIDMYDIALCEPLSELFAEELEYAFNFGA
SRS017814_Baylor_scaffold_27737	SRS017814_Baylor_scaffold_27737__gene_32398	F047508	MLGHRLVEGRVKYPYLRRIGEYLRHSFDTEDVGWVVKRSKLCALMEHIYYLWGDTYALSKALCTVYEAVTNGIDLIEGLYEVLFFKNVEDNLYAACVVRNVKVALNLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQGGAATVEDQDFHKVLYYMVRCELILSSP
SRS017814_Baylor_scaffold_28070	SRS017814_Baylor_scaffold_28070__gene_33069	F101359	FLSKRSILVGALALVLGFIVSSCSRDKDDDAIYTAKLQVQYQGNNSINGSVTYRDANGNKRKIYLRSGMSESISFEVNKGFKSFVEVKATDIYGNLFVKWTVTKTYTGARVQNWSTNFTSYTGQGITDSYKETVK
SRS017814_Baylor_scaffold_28316	SRS017814_Baylor_scaffold_28316__gene_33634	F059076	NTTIPTRTLTIKNSTADKGKPVLRLVDAPIYSKNVGSAMDADLGGNTATSTNYLDYRPLMVDAVGDVYKGLPINNMSILTLTIDKVNGDYIRKFDTGIDYNKYAVAIMSYTFKMPAPASGGIVMLRGGSNTPSVAHGGNKYGVTTAPATVLLTQNGSNWGIYADYPNIGSYEFTSGSTDIGQLVDGTWVITLLVGKRDAVNFTELNFNQGGSAEGIGNSNTTYATQLQNFLKKLE
SRS017814_Baylor_scaffold_28730	SRS017814_Baylor_scaffold_28730__gene_34804	F043235	MDEVVPSDEGHLLIDLCDDDPRSLCGGLGIVTRYPEGAIALFIGLAHRDQCDIYRIDTIPKEVWEFIEVTREIVDSLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLLPGSAH
SRS017814_Baylor_scaffold_9251	SRS017814_Baylor_scaffold_9251__gene_9393	F064818	MGERKKHPIPNNINGNTPKLYFTNHKFIVVLLPYFTYMNKDEFLKELIAFIADNSSELHPKVFKNKIRFGINKSSYTEMRFDYSQNYKGFYLQLASYNKEVGDFFEQEMDNTFLKMLEDESKEFRNLFFAQNSFQLSHYYYGFPIMTNDDTGHLYPEMGTTIFNDVLRNLQANHFKFIQAAEVLSPDLLHYIKRFPPCFFNTALVALLIIEKNLLSLDDERVQGLFEYDNMVTKNECKLFSPFDLIF