7000000008: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 159814214

Overview

Basic Information

• IMG/M Taxon OID: 7000000008
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052472 | Ga0029049
• Sample Name: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 159814214
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 26264299
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1
All Organisms → cellular organisms → Bacteria	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047508	Metagenome	149	N
F054109	Metagenome	140	N
F077404	Metagenome	117	N
F094006	Metagenome	106	Y
F105378	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2609530	Not Available	563
C2613933	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	647
C2616601	Not Available	715
C2616829	All Organisms → cellular organisms → Bacteria	723
C2629511	All Organisms → cellular organisms → Bacteria	5248

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2609530	C2609530__gene_41434	F105378	MKVSVYVDKLKKWVPISSDEILDRNKNLSDVKDKDAAITNLGLYDKFISKEALQSGFLPDVFTPENIQTDADHQFVSDSDKNNWNNKLNKPVEIQTNLEENQIGYDEVNEKFYIGLNNKNVLIGGASALDNIKIVNGFFSGNSQPTIIRNTKTREDGTLISPVFVDVQCVEYTG
C2613933	C2613933__gene_43571	F094006	EPAVCVEAHIGELQAGSIARRGLFAFGRSNVLAVAELGAKAPHAIDMYDIALCKPLSELFAEELEYAFNFGA
C2616601	C2616601__gene_44948	F054109	MAGRPKSKKGVKVHTAFKIYSDDKVRAQAMADKLDMSLSSYINKAVLEKVARDEKSEN
C2616829	C2616829__gene_45057	F047508	MLGHRLVEGCVKYPYLRRIGEYLRHSFDTEDVGWVVKRSKLCALMEHIYYLWGDTYALSKALCTVYEAVTDGVDLIEGLYEVLFFENVEDNLYAACVVRNVKVALNLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQGGAATVEDQDFHKVLYYYGKV
C2629511	C2629511__gene_53822	F077404	MVQQIIITRRLAAAALSLKEPTQIGNTKNPFAMNILKTAFAFFFALCFMMGANSYAQTTNRINAEASKRELKRNAIYIPPALEEYADTILLHQRFIVENKGNYLYTPFTKDNEPSIPFNYGFLHPLGERFYNSFMGKVDRILRPKEDKGFIILTNYLVVLDDKYAFDTSNKDTSKLADLKYLDFRRIKSDFSYGHPYQGFTDYDRVELSYFVQSYGRQAALETANTWVMASYPFSLQSTKFENLYTRGRKLILTDGKTTLSLYFLMIDSVALNFDTKVLPYIKGVFRFNRIQ