3300034683: Fracking water microbial communities from deep shales in Oklahoma, United States - K-7-3

Overview

Basic Information

• IMG/M Taxon OID: 3300034683
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118431 | Gp0324337 | Ga0310147
• Sample Name: Fracking water microbial communities from deep shales in Oklahoma, United States - K-7-3
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 389110958
• Sequencing Scaffolds: 9
• Novel Protein Genes: 15
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
Not Available	3
All Organisms → cellular organisms → Bacteria → Synergistetes → Synergistia → Synergistales → Synergistaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → planetary subsurface zone → fracking liquid
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.812
  • Long. (^o): -98.262
  • Alt. (m): N/A
  • Depth (m): 2943

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022008	Metagenome / Metatranscriptome	216	Y
F028664	Metagenome	191	Y
F033769	Metagenome / Metatranscriptome	176	N
F075996	Metagenome / Metatranscriptome	118	N
F077200	Metagenome / Metatranscriptome	117	N
F082560	Metagenome	113	N
F088079	Metagenome / Metatranscriptome	109	N
F103496	Metagenome / Metatranscriptome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0310147_000039	All Organisms → cellular organisms → Bacteria	148369
Ga0310147_001095	Not Available	25127
Ga0310147_004430	All Organisms → cellular organisms → Bacteria → Synergistetes → Synergistia → Synergistales → Synergistaceae	9830
Ga0310147_029113	All Organisms → cellular organisms → Bacteria	2218
Ga0310147_037228	Not Available	1800
Ga0310147_067039	Not Available	1070
Ga0310147_081359	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	898
Ga0310147_128161	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	588
Ga0310147_133461	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	566

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0310147_000039	Ga0310147_000039_1653_2333	F075996	MLNSSTGQAVGVLLPYWSYIPTDRISPKGLLYPVSQIMKEGNLLRFVMLVGGAKEEVSMAGKDFFWSDVNKMYLPEYCLIDITAKFRDRICTFTGLYAGKDGLFVNGKKAGSFKDISSIFAHYGLSEVWNLITGDIRPSCGVYRYGRLFVPETEVCLGLISERANFPKGYDMKDLGRVERILEDAGVFEIPEEISLADVEEKLSKFAEVEKILDGFADRDEETLLR
Ga0310147_000039	Ga0310147_000039_52673_53434	F077200	MVKFTVIEVKTQPNLKRIEEYAKRYGMTTEEALSKKRIGEDYFPIRDQQVVSVGLLNFVSEKEDSVGIMAAIYTGEEKKVLEETAKKLEKVVKATGKPFFITGDGRKYALELLAGRAMAHMIEAKRKDQEIIPEMKEMIKLLSSTKNGYLKPFDVRDSIDLQAAFGLGTDRTPAPDSLRYENKDLPALAEETKRSVLDMMTNYAAYLESQGEKIKPVVYKLNEKIFKTVEIFKFPEEEPDMEKGEINIVDIDR
Ga0310147_001095	Ga0310147_001095_2744_3097	F022008	MTLSEIEMLQSALNELSKQLQTLSDENRSSFGHIYDRLTRIETQMTERECRFKKYEKALENHEVRIRTVEGELGTLRDVPERLWRVSMSNSKLTGMIAAAGGMGGLVATLISKILGE
Ga0310147_001095	Ga0310147_001095_3099_3323	F103496	MPLDDRIRKLPLTKLIALYFTVFTCVLIVLDVTTLCPLTDKSADLLKWLGSTIIVGYFGKSAYEHKMNTTSGVK
Ga0310147_001095	Ga0310147_001095_342_611	F033769	MSAINCGVKTATYTPSTVGVAVGRKYLRLTNESLDMRCRAGVSNISSTAGIIIEPGQTVEFRPLPSENREIYVMSEGKAVKLAYYEVIV
Ga0310147_001095	Ga0310147_001095_4971_5363	F082560	MTEKAIVKKIQEWFKAKGGVCHKVHGGPLSAGFPDLIGCIEANAWVVEVKVPNAKPRVPKELRERLPKEMREWMEKGATMLQAKTLYDWQCAGAIAMVATSVEDVERRYQEEYFGSNIGGKHYGGFKRTQ
Ga0310147_004430	Ga0310147_004430_5981_6334	F022008	MTLSDIEILQSTLRDLSKQVQKLSEENRVSFNHIHDRLTRIETQMSERECQFKRYEKQLENHEVRIRTVEGELGTLRDVPERLWRVSMSNSKLTGMIAAAGGVGGLVATIIVKMLGD
Ga0310147_004430	Ga0310147_004430_6336_6563	F103496	MPLDDRIRKLPLTKLIALCFTVFTCVLIVLDVTTLCPLTDKSADLLKWLGSTIIVGYFGKSAYEHKINTTSGMKQ
Ga0310147_004430	Ga0310147_004430_8207_8650	F082560	MYAVIWRAWISLDGGIGMTEKAIVKKIQEWFKAKGGVCHKVHGGPLSAGFPDLIGCIEADAWVVEVKVPNAKPRVPKELRERSPKEMQEWMEKGATMLQAKTLYDWQCAGAIAMVATSVEDVERRYQEEYFGFSIGGKHYDRFRRTQ
Ga0310147_029113	Ga0310147_029113_1795_2187	F082560	MTEKAIVKKIQEWFKAKGGVCHKVHGGPLSAGFPDLIGCIEANAWVVEVKVPNAKPRVPKELRERLPQEMREWMEKGATMLQAKTLYDWQCAGAIAMVATSVEDVERRYQEEYFGSNIGGKHYGGFKRTQ
Ga0310147_037228	Ga0310147_037228_800_1192	F082560	MTEKAIVKKIQEWFKAKGGVCHKVHGGPLSAGFPDLIGCIEADAWVVEVKVPNAKPRVPKELREGLPKEMREWMEKGATMLQAKTLYDWQCAGAIAMVATSVEDVERRYQEEYFGSNIGGKHYGGFKRTQ
Ga0310147_067039	Ga0310147_067039_464_859	F028664	MILIGGQALRNLGSDRYTEDIDFLIDNKESNQAFITGASVDYLNANANKFFKEIYNIEEGNEQATPQSLFELKAYAFVQHCQNFNFAKADACEYDLKFLVRNFDVKPNIVKRYISSGELSEINKIINSVKK
Ga0310147_081359	Ga0310147_081359_1_225	F088079	MLTEKAIWLEKVPFRNVDGAIGGQNCPVYFVESMIVGQSCTFCTSILGNLAPNPYIMLTRLDVFIHICEIYKVDI
Ga0310147_128161	Ga0310147_128161_244_504	F088079	MLTEKAIWLEKVPFRSIDEAIGGQNCSVYFVESMFVGQSCTFCTSRLGNLAPNPYRMLTRLDVFVHICEIYKADITFFKSNVVSTK
Ga0310147_133461	Ga0310147_133461_336_566	F088079	MLTEKAIWLENVPFRSIDEAIGRQNCSVYFVESMIVGQSCTFCTSRLGNLAPNPYRMLTRLDVFIHICEIYKVDITF