3300034520: Fracking water microbial communities from deep shales in Oklahoma, United States - M2-7-1

Overview

Basic Information

• IMG/M Taxon OID: 3300034520
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118431 | Gp0324326 | Ga0310136
• Sample Name: Fracking water microbial communities from deep shales in Oklahoma, United States - M2-7-1
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 170447213
• Sequencing Scaffolds: 8
• Novel Protein Genes: 11
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	2
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → planetary subsurface zone → fracking liquid
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Alt. (m): N/A
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001938	Metagenome / Metatranscriptome	614	Y
F022008	Metagenome / Metatranscriptome	216	Y
F066897	Metagenome / Metatranscriptome	126	Y
F075996	Metagenome / Metatranscriptome	118	N
F082560	Metagenome	113	N
F087072	Metagenome / Metatranscriptome	110	Y
F088079	Metagenome / Metatranscriptome	109	N
F103496	Metagenome / Metatranscriptome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0310136_000349	All Organisms → cellular organisms → Bacteria	41297
Ga0310136_002202	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	9982
Ga0310136_003603	All Organisms → cellular organisms → Bacteria	6686
Ga0310136_007171	All Organisms → cellular organisms → Bacteria	3576
Ga0310136_011403	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	2315
Ga0310136_012206	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	2170
Ga0310136_020477	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium	1311
Ga0310136_021551	Not Available	1248

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0310136_000349	Ga0310136_000349_13763_14107	F082560	VSEKFVVKKIQEWFKSKGGVCHKVHGGPMSAGFPDIIGCIRGRTWVVEVKVPGAKPRVPRAKRNEVSQEMQEWLTMGATMLQAKTLYDWQNAGAVALVATSVEDMEQKFKEGQI
Ga0310136_000349	Ga0310136_000349_15388_15795	F066897	MARKYDHCWLFWQVNLRAQDRYYRRKEGELMSSKWFWLILIAVILFSAIFLWHTHTSTQETLIKAQETIKEAKQALRESQDALQKLDEITQKIQDVTRIAKEAGDERVEEIKYVSDDDFLSIVNEYSTLMVERVE
Ga0310136_000349	Ga0310136_000349_15937_16290	F022008	MTITEIEALREVLNDLSKQVQALSEENRTSFGRIYDRLTKIETQMSERERQFNRYEKTIENHEMRIRTVEGELGTLRDVPERLWRVSMSNSKLTGMIAAAGGVGGLVATIIVKMLGE
Ga0310136_002202	Ga0310136_002202_1640_1858	F087072	MKSKIFTKRMFLLELSEEELSIIAGALYCANNEDIKCFVDKYKYPCSGYSFDEVAESQEKLSEEINRLIENK
Ga0310136_003603	Ga0310136_003603_27_287	F088079	MLTEKAIWPENVPFRSIDGAIGGQNCSVYFVESMIVGQNCTFCTSILGNLLPNPYRMLTRLDVFIHICEIYKVDITFFKSNVVSTK
Ga0310136_007171	Ga0310136_007171_666_902	F103496	MPLNDRVRRLPLTKLIALCFTIFTCVLILLDVMSVCQLTDRSTDLLKWLGSTIIVGYFGKSAYEHKVNTISERANSQP
Ga0310136_007171	Ga0310136_007171_904_1257	F022008	MTLSEIEMLQSALNELSKQLQTLSDENRSSFGHIYDRLTRIETQMTERECRFKKYEKALENHEVRIRTVEGELGTLRDVPERLWRVSMSNSKLTGMIAAAGGVGGLVATIIVKMLGD
Ga0310136_011403	Ga0310136_011403_452_619	F001938	MVTCDNCGTGQECDSWADVMDFMNEEGWKKKLVGGEWKHFCPECSEVMKGNITTN
Ga0310136_012206	Ga0310136_012206_29_247	F087072	MKSRVFTKRMFSLELSEEELSIIAGALYCANNEDIICFVDKYKYPCSGYSFDEVAELQEKLSEEINKLIESK
Ga0310136_020477	Ga0310136_020477_29_247	F087072	MKSRVFTKRMFSLELSEEELSIIAGALYCANNENIICFVDKYKYPCSGYSFDEVAELQEKLSEEINKLIEGK
Ga0310136_021551	Ga0310136_021551_29_709	F075996	MLNSSTGQAVGVLLPYWSYIPTDRISPKGLLYPVSQIMKEGDLLRFVMLVGGAKEEVSMAGKDFFWSDVNKMYLPEYCLIDITAKFKDRICTFTGLYAGKDGLFVNGKKVGSFKDISGIFAHYGLSEVWNLITGDIRPSCGVYRYGRLFVPETEVCLGLLSERANFPKGYDMKDLGRVERILEDAGVFEIPEEISLADVEEKLSKFAEVEKILDGFADRDEETLLR