3300034142: Biocrust microbial communities from Mojave Desert, California, United States - 55SNC

Overview

Basic Information

• IMG/M Taxon OID: 3300034142
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0136120 | Gp0356275 | Ga0334959
• Sample Name: Biocrust microbial communities from Mojave Desert, California, United States - 55SNC
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 226226483
• Sequencing Scaffolds: 15
• Novel Protein Genes: 17
• Associated Families: 15

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas	1
Not Available	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae → Tychonema → unclassified Tychonema → Tychonema sp. LEGE 06208	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera → Nitrososphaera sp.	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Chroococcales → Aphanothecaceae → Crocosphaera → Crocosphaera chwakensis	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil And Biocrust Microbial Communities From Mojave Desert, California, United States
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Biocrust → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): desert biome → desert → soil biocrust
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: USA: California
• Coordinates
  • Lat. (^o): 34.3778
  • Long. (^o): -117.6098
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000265	Metagenome / Metatranscriptome	1420	Y
F001042	Metagenome / Metatranscriptome	794	Y
F005545	Metagenome / Metatranscriptome	397	Y
F005661	Metagenome / Metatranscriptome	393	Y
F006886	Metagenome / Metatranscriptome	362	Y
F007252	Metagenome / Metatranscriptome	354	Y
F011201	Metagenome / Metatranscriptome	293	Y
F014784	Metagenome / Metatranscriptome	260	Y
F017778	Metagenome / Metatranscriptome	238	Y
F024393	Metagenome / Metatranscriptome	206	Y
F042091	Metagenome / Metatranscriptome	159	N
F044404	Metagenome / Metatranscriptome	154	Y
F059598	Metagenome	133	Y
F060269	Metagenome / Metatranscriptome	133	Y
F069716	Metagenome	123	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0334959_001258	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	7433
Ga0334959_004061	All Organisms → cellular organisms → Bacteria	2825
Ga0334959_008725	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas	1609
Ga0334959_009097	Not Available	1568
Ga0334959_010059	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales	1482
Ga0334959_011457	Not Available	1379
Ga0334959_016614	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae → Tychonema → unclassified Tychonema → Tychonema sp. LEGE 06208	1136
Ga0334959_017853	All Organisms → cellular organisms → Bacteria	1097
Ga0334959_032019	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	826
Ga0334959_039199	Not Available	752
Ga0334959_051087	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	664
Ga0334959_051736	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera → Nitrososphaera sp.	660
Ga0334959_073766	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera → Nitrososphaera sp.	563
Ga0334959_082593	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Chroococcales → Aphanothecaceae → Crocosphaera → Crocosphaera chwakensis	534
Ga0334959_082951	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Chroococcales → Aphanothecaceae → Crocosphaera → Crocosphaera chwakensis	533

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0334959_001258	Ga0334959_001258_2588_3349	F014784	MSNWHEDRTGKLREFFALDAGRELVAADTTAKFELRPEMDEGLRHFNIEWHVVPAAEAVPLDDDYFARLYPSAPHDFTKTREHGHNYRQQLLKGHARHQGRVVGVETTAKPRYLPGNRQFYGTTYGHDATADPFAAYMGRAGMMNGMRYAHNYLSLRAFLNVVNEDWRARRLLPAGYRVTVCPPAVFNLVGTVFHPEWSETETLELGFYRDEQGNATCFAVGSNAPGEFSYINEVEGESEWSLMGFRLALVPD
Ga0334959_004061	Ga0334959_004061_1383_1760	F001042	MTFTGDCPEGRSQDLTCAEADAKIVIDKMLVNKLTELLITSIYSVHTSRRSEIFLTSLDMHLAEYSISNKNDPACREFSEKSSLLLESYQEDVPKSLGKAESCLGEAIDLINLIVSASEAGVNNE
Ga0334959_004061	Ga0334959_004061_2_301	F011201	MKKSKAKSKIGHGGARPGAGRLPLWKHRPLKMVRLPLAFVGEILKVAHYMDQNDGRLPFSQASEDLIIISGHPSKSLSGEEIKALAAREKARELAERVMV
Ga0334959_008725	Ga0334959_008725_1272_1517	F005545	MEEKNEQSVDDRGTSETQGREILKRLRDQGFESDDERLAVALGRPVEEVQGWMTGSPDEPVDDDIVMKARGIAKERGIELE
Ga0334959_009097	Ga0334959_009097_1_738	F024393	MHVKESSATALVRFTGLGIICFNEDKQRGEIAALRDNKHSLTIKIQQPVYQDGAENDLIVYRDIAVYQNLPKDEVQIEIKALRNPAVEGYEIYHSENFDRLSSTDVNDFRWIVNMDRLHGDTALRPAAERRYPLTKIYVGNGLFYTHKLDTNLLFEKVATDESGTAQQREVFGNVAETVGVKIEGDEVSFTIRIGDSEETHSLKRADGLPFRIEFKNMDYSENAVYSDMADYYGFLSSPDGNRFDL
Ga0334959_010059	Ga0334959_010059_600_809	F059598	MKHSKKKKQGVGGRPHKWASGKTKTVRVPVAFLKEVFALINELDRREQERKLLQSSQPLIKLWHPDPQK
Ga0334959_011457	Ga0334959_011457_456_776	F044404	VVSGVRGLLGALVTGAVGVLVLIACGTSSEGTVVAKADQGVYDYACQAGGAVTGPVGVPMWGTCFVPECWRLVVRDDDGITSKPCVSREEYDRTQLGAFWHGRTDR
Ga0334959_016614	Ga0334959_016614_1_537	F069716	MLANKNQAIVSGLLGLGVAGLAVATALPFNDRIEYRIGNRIESQPAWLVPPKAEFRAIKRGYGGIKILLALLGTGGMITVMLIARREGEQEPVRQRIKQYQNQAYEFGFAAEAAYQMATTQTRYKKLAEADEVAFEDEIEQAYCESLGIDPQQQQAALTGTTTLESVADPSDKVQGGTS
Ga0334959_016614	Ga0334959_016614_524_988	F006886	MYQDFDASEFDYLNSATPQQFEQQTKTQTPEVTNIERFWNLTGNWGEFGSYFGAGLSASLIVRAIPTLIPAALILIPASGLGLALYSLSAEGAGKVRAQLILLAIGTALLSANWDGWLAWIVANSQLLIFSFLVVVIVLGFVGTQIWSRLNVSQ
Ga0334959_017853	Ga0334959_017853_2_235	F000265	MTELRGAIAPPEIKAEWERAYELYREAPGAPHDKKLDRTERISYVAVKLNLTRKQAKRRIRNYEAWQRNISKGLVAR
Ga0334959_032019	Ga0334959_032019_1_552	F005661	MQFRVAQTSGAAHVAREFDYHSGPLTPEMVNEAGRKAKILDLQKQLRTAYNRHDAKIRANKVELERLTLEAIESGLTDKAQIDKYVGKAIVAGAKHDKHIATLSHELQQQLNLVKVEGASEVTLANANFRQRLLLIKANHTAKGQIQLHSFQQSLKAIQASPQQASAMQQKRSAFNAYINAKDY
Ga0334959_039199	Ga0334959_039199_1_315	F042091	RSQLFTFKAKETITVDHPTLEHIFALLNGCSANFKYLCDNDIFVFATKNYLASLDNPESGKALNLLGVWTDTWPEASEELADGLDEAVQSIKFILTATAGGRND
Ga0334959_051087	Ga0334959_051087_356_580	F060269	MTSRVEVFVRSGHTIDLALEDGQDRIFANALHEAWASPDAIGFKHLALGENAVILASEVVGYRIHGPMQTDSSM
Ga0334959_051736	Ga0334959_051736_53_430	F001042	MTFTDDSLCGRSQDLTCAEANDKIVIDKLLVNKLTELLITSIYSVHTSRRSEIFLTSLDMHLAQYSISNKNDTAHREFSEKSALLLESYQEDVPKSLVKAESCLGEAIGLINLIVSASEAGVNNE
Ga0334959_073766	Ga0334959_073766_153_530	F001042	MTLTEDCPEGRSQDLTCAEADGKIVIDKMLVNKLTELLITSIYSVHTSRRSEIFLTSLDMHLAEYSISNKNDTAHREFTEKSALLLESYKEDVPKFLGKVESCLGEAIDLINLIVSASEAGVNNG
Ga0334959_082593	Ga0334959_082593_146_532	F007252	MKKSKGKSKCGRGGARPGAGGVCRWKHGRTKLVRLPVALLDEILEVARYMDQNEGRLPPPAPPVITSGHLSESLSGEELKEFLAKKKARKLAEKVMCGDERVVVSDKTFAAFDIFEVPPAQKARSSSR
Ga0334959_082951	Ga0334959_082951_63_521	F017778	MAKGKTKGKRGGIRPGAGNPYKWKHGETKPVRLPIVLIPKILEIAQLIDGQEYINRVEHEFDDEEGSPKYYNGYYAGQLMYLRIGNDELASEVRNLRRENEALKAQLMELNNGVLPEPLSDSSNLLFVYEPKPLAKQDRRKKRKAIFVEKQV