3300033999: Fracking water microbial communities from deep shales in Oklahoma, United States - M1-7-2

Overview

Basic Information

• IMG/M Taxon OID: 3300033999
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118431 | Gp0324324 | Ga0310134
• Sample Name: Fracking water microbial communities from deep shales in Oklahoma, United States - M1-7-2
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 195297360
• Sequencing Scaffolds: 2
• Novel Protein Genes: 5
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Thermodesulfobacteria → Syntrophia → Syntrophales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → planetary subsurface zone → fracking liquid
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: USA: Oklahoma
• Coordinates
  • Lat. (^o): 35.784
  • Long. (^o): -98.26
  • Alt. (m): N/A
  • Depth (m): 2896

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022008	Metagenome / Metatranscriptome	216	Y
F066897	Metagenome / Metatranscriptome	126	Y
F082560	Metagenome	113	N
F103496	Metagenome / Metatranscriptome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0310134_001705	All Organisms → cellular organisms → Bacteria	15148
Ga0310134_006088	All Organisms → cellular organisms → Bacteria → Thermodesulfobacteria → Syntrophia → Syntrophales	4901

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0310134_001705	Ga0310134_001705_3225_3569	F082560	VSEKFVVKKIQEWFKSKGGVCHKVHGGPMSAGFPDIIGCIKGRTWVVEVKVPGAKPRVPKAKRNEAPQEMQEWLAMGATMLQAKTLYDWQNAGAVALVATSVEDMEQKFKEGQI
Ga0310134_001705	Ga0310134_001705_4878_5195	F066897	MNSKWFWLIIIAIILTSAVFLWHNHTSTQELLLQTKETIETTKEILEKNKNALQKIDEITQKMQDVTRIAKEAGDERVKEIKFVSDDSFLNIVNKYSTLMVERVE
Ga0310134_001705	Ga0310134_001705_5192_5422	F103496	MPIDDKIRRLPLTKLIALCFTIFTCVLIILDVTSLCPLTERSADLLKWLGSTIIVGYFGKSAYEHKIDTAERRKDS
Ga0310134_001705	Ga0310134_001705_5424_5771	F022008	MNDIEFLREALNDLSKQLQTLSEDNRASFGRIYDRLTKIETQMTEREHQFNRYEKTLNNHEKRIRAVEGELGTLRDVPERLWRVSMSNSKLTGMVAAAGGVGGLVATIIVKMLGE
Ga0310134_006088	Ga0310134_006088_148_375	F103496	MSFNDGVRRLPLTKLIALYFTIFTCVLIVLDVTSLCPLTERSADLLKWLGGTIIVGYFGKSAYEHGVNIKKSDQS