NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300033817

3300033817: Laboratory-enriched microbial communities from a contaminated site in Ontario, Canada - KB1_TCB MSP



Overview

Basic Information
IMG/M Taxon OID3300033817 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0134237 | Gp0401793 | Ga0373875
Sample NameLaboratory-enriched microbial communities from a contaminated site in Ontario, Canada - KB1_TCB MSP
Sequencing StatusPermanent Draft
Sequencing CenterBeijing Genomics Institute (BGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size190659356
Sequencing Scaffolds11
Novel Protein Genes17
Associated Families14

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria6
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae1
All Organisms → cellular organisms → Bacteria → Acidobacteria1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae1
All Organisms → cellular organisms → Bacteria → Thermotogae → Thermotogae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMetagenomes From 1,2,4-Trichlorobenzene Dechlorinating Enrichment Cultures
TypeEngineered
TaxonomyEngineered → Bioremediation → Persistent Organic Pollutants (Pop) → Unclassified → Unclassified → Anaerobic Enrichment Culture → Metagenomes From 1,2,4-Trichlorobenzene Dechlorinating Enrichment Cultures

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationUniversity of Toronto, Ontario, Canada
CoordinatesLat. (o)43.65699737Long. (o)-79.3957Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000335Metagenome / Metatranscriptome1276Y
F000451Metagenome / Metatranscriptome1124Y
F001564Metagenome / Metatranscriptome670Y
F002448Metagenome / Metatranscriptome558Y
F007212Metagenome / Metatranscriptome355Y
F011110Metagenome / Metatranscriptome295Y
F021528Metagenome / Metatranscriptome218N
F025668Metagenome200Y
F041367Metagenome / Metatranscriptome160Y
F050849Metagenome144Y
F069750Metagenome / Metatranscriptome123N
F070782Metagenome / Metatranscriptome122N
F083634Metagenome112Y
F088355Metagenome / Metatranscriptome109Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0373875_000097All Organisms → cellular organisms → Bacteria180571Open in IMG/M
Ga0373875_000145All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae141234Open in IMG/M
Ga0373875_000785All Organisms → cellular organisms → Bacteria23335Open in IMG/M
Ga0373875_000898All Organisms → cellular organisms → Bacteria → Acidobacteria19443Open in IMG/M
Ga0373875_001284All Organisms → cellular organisms → Bacteria12526Open in IMG/M
Ga0373875_001351All Organisms → cellular organisms → Bacteria11696Open in IMG/M
Ga0373875_001897All Organisms → cellular organisms → Bacteria7951Open in IMG/M
Ga0373875_001921All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanoregulaceae7844Open in IMG/M
Ga0373875_005205All Organisms → cellular organisms → Bacteria3048Open in IMG/M
Ga0373875_025433All Organisms → cellular organisms → Bacteria → Thermotogae → Thermotogae826Open in IMG/M
Ga0373875_025759All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae817Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0373875_000097Ga0373875_000097_9941_10363F025668MTKESIIEAQEYLRVKTQYGFRRILDVRSLFEGYNDVEVIKFLKNHLREKEKTLKNMILIDKSHPRVDQIVASMFRLSMSIKTLEEGEEVMMIERSQQGAEESGQFHKRDSGCHSGPGIGKNPGHDGKDRKSGQTIQRAA
Ga0373875_000145Ga0373875_000145_138_245F088355MKKLTSKINLFVAILTIALFVLAAGAPNATIGIGR
Ga0373875_000145Ga0373875_000145_543_650F088355MKHLTHKINLFVAILTIALFVLAAGAPNATIGIGR
Ga0373875_000785Ga0373875_000785_3824_4009F050849MSIRADFLEREAGHVVVCLILIAMGAGLWLLRVPKGEELIPFALGVLGRSMLGTKPPGNV
Ga0373875_000898Ga0373875_000898_12896_13423F000451MPRFQTVIRRARFIYSPYTAYEMQGFAQVLADAIRARIQSGQNIYDQAAAPLKPGKPGRRGYPDYKSARGLQPIRDWTWSGHTLRCLKVLTANENRTVIGFLDEAMSGRKQTASQIAFYNNQREHQWGVSPRDRAALLAVMLNYRPLVVAAGGTELAGFRQYGAAVYFSALRPAA
Ga0373875_000898Ga0373875_000898_16775_17272F002448MISPKTLLGEWVTALQALPNLLQALGGNANHIQFYSENAVVFGKPTQNNIRLAILSMPPGSILVAWQGTAPGRLGNMLVFVHDFSLYLRAPEEADVGYEDLFNWIVNDIPAGGTLRMLHTQVDPNCEPMDFYLPSARRNTIVISGDGATFEYFEIPVRLIESYNP
Ga0373875_000898Ga0373875_000898_17259_17600F007212MSDWSALAIDVNAIMQQAFGEPVVYQPVQGGFAVGYPLTITAIRHTRERAESGTAASAEEISINPANLPNFPQPGDWVTAWGVQFVVGPVRQPDAYGMAQLSLVARQSPDDQP
Ga0373875_000898Ga0373875_000898_8607_9023F000335MPGNLQQAAPNGVMPLSLCTAFTELREYLQLQNQYHDGTIHRSQLAQTSRRTFRLSKRLSTSQLAVLYNFWVSQNAGLTPFAFYNPFDVLAGQQIGSNYDSTGNNTVGRVTVVFRGNWAQATDLARSNVQGLELVEVV
Ga0373875_001284Ga0373875_001284_11200_11361F011110MSEERVWMRPPWGAGEPKQVEATPEVLVPLMTAGWAQCEPPVSTGEEKADVHD
Ga0373875_001351Ga0373875_001351_263_670F041367LLIFRSVHAADLCGGGADGPRGCPDANDVTCGKCGLVRAVDDTNAPGACPQCGGWQFVVNRCAHCKLDDLDYARTHSHAGRLFERVLELEFDAVHFSIPWSDVTAEEVRGLQILKEERDRYQREQLQKQPHAFPS
Ga0373875_001897Ga0373875_001897_2340_2582F001564LCPEAPQGGRCDHCPQDKLDAAQASEGGLLIRRALDLRAALNLGIHIGLDDIRADEFYTMLILEEERDQLERERASTHGK
Ga0373875_001897Ga0373875_001897_4320_4460F011110MKPPFGVGDPKEVDATPDVLTPLMVAGWNQCDPPADSEEVTTNVHD
Ga0373875_001921Ga0373875_001921_1662_1976F083634MYIMLKMADQTISLDRIRIGGRVCRLARKLIVTIEHEDDRLTLSNEEFGLVVSAETLEEGIAGLSEELATLWEVYVDEDPANLTADALRLRSNLTSLVPAGVSL
Ga0373875_005205Ga0373875_005205_1055_2293F021528MSSPSLGSLNEKEASEQELLNLFLFCGNSIIQRFKRVESFRVKQETKLLMYNKAVLLQELQHRELNMIDTLKLMLNDFEISSDSEVRVQPASYELGTGTKVEYPLFYTHEKGSQFGSKAYLNSDTWNFTLKPIAGGAGVGAFLQLSIPKNYYGNNFYSVGEQGTKATLSKVEGELKEKGVHASLSEADMSRVDTFKNIEPEEPFSSYYTLFSLLKARRAIQRGYGTTFLLSNTQQEFCVYDKLEEMRERSIDTTGYPSTMRFEHRLLNKAKVQSTYGFTKVADIFKGGYEVIREKQVESWKNSLFSFTAEELVLIGSKQLEQEMKRFKDEAPINWFSRFLKAYGAYYLASYAGKDVVIEALKNLEAERTMVWRAVKKFEVAERELLVLKQEEGSSKTLGTLYEELRRKVCLN
Ga0373875_005205Ga0373875_005205_233_478F069750LIVGEYPLQENSFFVEGEKFLIRERKKEKGKKTKYYLCRLQPFRYVSSLFPTGEEESYTFDFEQKLYRLERREHSVTLKFV
Ga0373875_025433Ga0373875_025433_673_825F070782QSDVVYEVNDKVNWAGVNILDRDAEETTEAIHSSVHLDFTLARVDKKYPN
Ga0373875_025759Ga0373875_025759_356_487F088355MKNLTTKLNLFAGQKGQLVLAILTIALFVLAAGAPNATIGIGR
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