Sample 3300033780

Overview

Basic Information
IMG/M Taxon OID	3300033780 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0131983 \| Gp0356194 \| Ga0334878
Sample Name	Peat soil microbial communities from Stordalen Mire, Sweden - 715 E3 1-5
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	76590966
Sequencing Scaffolds	14
Novel Protein Genes	15
Associated Families	14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	5
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geobacter → unclassified Geobacter → Geobacter sp.	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Endozoicomonadaceae → Endozoicomonas → Endozoicomonas montiporae	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Peatland Microbial Communities From Stordalen Mire, Sweden
Type	Environmental
Taxonomy	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → peatland → peat soil
Earth Microbiome Project Ontology (EMPO)	Unclassified

Location Information
Location	Sweden: Norrbotten County, Stordalen Mire
Coordinates	Lat. (^o)	68.3533	Long. (^o)	19.0468	Alt. (m)	N/A	Depth (m)	0
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000769	Metagenome / Metatranscriptome	898	Y
F009089	Metagenome / Metatranscriptome	323	Y
F012522	Metagenome / Metatranscriptome	280	Y
F028913	Metagenome / Metatranscriptome	190	Y
F039551	Metagenome	163	Y
F059491	Metagenome	134	Y
F061012	Metagenome	132	Y
F064436	Metagenome / Metatranscriptome	128	Y
F079956	Metagenome / Metatranscriptome	115	Y
F091051	Metagenome	108	Y
F091904	Metagenome / Metatranscriptome	107	Y
F093188	Metagenome	106	Y
F100480	Metagenome	102	N
F102207	Metagenome	101	Y

Family

Category

Number of Sequences

3D Structure?

F000769

Metagenome / Metatranscriptome

898

F009089

Metagenome / Metatranscriptome

323

F012522

Metagenome / Metatranscriptome

280

F028913

Metagenome / Metatranscriptome

190

F039551

Metagenome

163

F059491

Metagenome

134

F061012

Metagenome

132

F064436

Metagenome / Metatranscriptome

128

F079956

Metagenome / Metatranscriptome

115

F091051

Metagenome

108

F091904

Metagenome / Metatranscriptome

107

F093188

Metagenome

106

F100480

Metagenome

102

F102207

Metagenome

101

Scaffold	Taxonomy	Length	IMG/M Link
Ga0334878_000173	Not Available	1709	Open in IMG/M
Ga0334878_000547	Not Available	1265	Open in IMG/M
Ga0334878_001134	All Organisms → cellular organisms → Bacteria	1008	Open in IMG/M
Ga0334878_001346	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	962	Open in IMG/M
Ga0334878_002636	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geobacter → unclassified Geobacter → Geobacter sp.	791	Open in IMG/M
Ga0334878_006312	Not Available	609	Open in IMG/M
Ga0334878_007178	Not Available	586	Open in IMG/M
Ga0334878_007886	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Endozoicomonadaceae → Endozoicomonas → Endozoicomonas montiporae	570	Open in IMG/M
Ga0334878_008124	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	565	Open in IMG/M
Ga0334878_008642	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geobacter → unclassified Geobacter → Geobacter sp.	555	Open in IMG/M
Ga0334878_008885	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	550	Open in IMG/M
Ga0334878_009516	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	540	Open in IMG/M
Ga0334878_011564	Not Available	512	Open in IMG/M
Ga0334878_012398	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	502	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0334878_000173

Not Available

1709

Open in IMG/M

Ga0334878_000547

Not Available

1265

Open in IMG/M

Ga0334878_001134

All Organisms → cellular organisms → Bacteria

1008

Open in IMG/M

Ga0334878_001346

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria

962

Open in IMG/M

Ga0334878_002636

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → Geobacter → unclassified Geobacter → Geobacter sp.

791

Open in IMG/M

Ga0334878_006312

Not Available

609

Open in IMG/M

Ga0334878_007178

Not Available

586

Open in IMG/M

Ga0334878_007886

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Endozoicomonadaceae → Endozoicomonas → Endozoicomonas montiporae

570

Open in IMG/M

Ga0334878_008124

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium

565

555

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium

550

Open in IMG/M

Ga0334878_009516

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria

540

Open in IMG/M

Ga0334878_011564

Not Available

512

Open in IMG/M

Ga0334878_012398

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

502

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0334878_000173	Ga0334878_000173_539_1018	F100480	MNMEHIYETETMAELCVRQGRLSEAIAIFRELAETASDPNMRARARTRLTALQATWQPLRVTETPPAALDLPQSPGVSVLVGEDQVTVAWALPPDTRSPALDVLVLQRTPNGIDPQKKLLPLSQSSGRIGLLLPGVHSALAAVGTVREGRFVPIVQSAR
Ga0334878_000547	Ga0334878_000547_59_439	F000769	MQRFLCPPCGHTVSVLPANRLPYRPLEVERLQGGFDAQAEVGTGLDPPPELIEAGCLQRAWNRFLTRVNILQDAFGQILPAELHTAQQLWKELRRGVGSAESMLRFLARHCKRSLLGDYACLRPVP
Ga0334878_001134	Ga0334878_001134_2_136	F091051	VKIEGEVLGGDYVLSWATGRFLKIPRQFDTDSLRRLLSVLEALR
Ga0334878_001346	Ga0334878_001346_1_492	F079956	MNAKGISYVVTKANMTAAFGEARWTAFMAKLAEKDKYFSTVIMSITPMPVEKLIVLFDEMCKEFFNDDNMQYVMFGKAGAKGVLSPDGPYKSFMLTKDIKQFVESVLPKIWTMYFDSGVTTARLENNVAHIKITGIQIKYTYFEYLVMGYFQQAIKMFGKKSVA
Ga0334878_002636	Ga0334878_002636_687_791	F061012	MQAQYEMKVQVIRSKGRATRLFVNVPLPLAAALDL
Ga0334878_006312	Ga0334878_006312_259_609	F059491	MYSLNKLTDDNIPIPITHICKPERLGKDMTGLELHEFGLALFMTFIEVQNGKLRAINMNPENGAPNVLVEDYQKVLLYVWVKTDLAPNIPVYVPNETHDVITEISKQYRARPCFASI
Ga0334878_007178	Ga0334878_007178_145_540	F091904	MLPNAGATMPGQNQPESHEVPVGSERTLRRQDDTARFIERFEVLTGFRVHSTSREGLPREFLARTLPAPDILVGQYGYELEPRTHNALCRYEPGRQADRWTYGRLLEIRGFGVFSLLDLLEVLAKHGIRST
Ga0334878_007886	Ga0334878_007886_307_570	F012522	STKRTRSLDERFAQRPQTYRRLHEIADLMDRALAGGATLDEAEAMAIEQIRKLGSELLGDWAQARHDQALAQARKDHPQSSKHIKKK
Ga0334878_008124	Ga0334878_008124_312_563	F028913	MHLRSVVGVVELKVWHGKDPRDGHWGSPVRERWGLKAHQQMSPALEEKLAFTATLAGSYAAAGQVAAKWGSDVDDSVIHALVQR
Ga0334878_008642	Ga0334878_008642_438_554	F061012	MQAEYEMKVQVIRSEGRAARLFVNIPMPLAAALDLQAGE
Ga0334878_008885	Ga0334878_008885_2_508	F093188	MTVYLQPNRSASPSLETLVDEIVARGEDSLLEQDIARWRADLRKRLEQIQQHPEQGLGFIEEHVRQATLQLQRLLVQKAMQDKADTVDEECPDCHSRLGHKKRRVPRWVDAYCGKVKLVRTHGWCPHCQHWVFPADRVLGLRDDSTASPLVQEMCALLVSKMPAEQAET
Ga0334878_009516	Ga0334878_009516_1_225	F039551	MANRHRRSHEIQFEFAFDRLHATKLEQVFAILVPNRERRIDESTGLKGESHENSSHIRPCLFGSTEGGEDHSQSD
Ga0334878_009669	Ga0334878_009669_25_537	F102207	MAAPAEAAWGVPSLLPQTHSGPTDQSWMKDVPEKPGERARGKVAVFTFNGDDALEPVRAAVVRTLRKQQLRVTATLRPADNPAQYREMSCFSDLAVFIDGEIGGDGDRRTAVIRLRSGVTGQYFTTAKFSGSMQAITGAIGAALWNRVGSAIMRTCSSASRPRRQVSAPTY
Ga0334878_011564	Ga0334878_011564_316_495	F064436	VKVTEVPAQTGFAEGAIITLTGRFGLTVMVIVFEVAGLPVIQVALEVKTQVTASAFNGI
Ga0334878_012398	Ga0334878_012398_3_500	F009089	FEEWKGLAAQCDETAHLTARERKARASAKLVHPDRLTEAATRYMDCEALAYWARQALERGAEPPPEVVRELERRCPGYLDAGLKARAQDASAATQEWQRLMLWIADHFFQDAQTEGWFEAILIQVRSHPRAIRTMEYADHCDEVWISELPSPYPSFEDWRRDADSY

Scaffold ID

Protein ID

Family

Sequence

Ga0334878_000173

Ga0334878_000173_539_1018

F100480

MNMEHIYETETMAELCVRQGRLSEAIAIFRELAETASDPNMRARARTRLTALQATWQPLRVTETPPAALDLPQSPGVSVLVGEDQVTVAWALPPDTRSPALDVLVLQRTPNGIDPQKKLLPLSQSSGRIGLLLPGVHSALAAVGTVREGRFVPIVQSAR

Ga0334878_000547

Ga0334878_000547_59_439

F000769

MQRFLCPPCGHTVSVLPANRLPYRPLEVERLQGGFDAQAEVGTGLDPPPELIEAGCLQRAWNRFLTRVNILQDAFGQILPAELHTAQQLWKELRRGVGSAESMLRFLARHCKRSLLGDYACLRPVP

Ga0334878_001134

Ga0334878_001134_2_136

F091051

VKIEGEVLGGDYVLSWATGRFLKIPRQFDTDSLRRLLSVLEALR

Ga0334878_001346

Ga0334878_001346_1_492

F079956

MNAKGISYVVTKANMTAAFGEARWTAFMAKLAEKDKYFSTVIMSITPMPVEKLIVLFDEMCKEFFNDDNMQYVMFGKAGAKGVLSPDGPYKSFMLTKDIKQFVESVLPKIWTMYFDSGVTTARLENNVAHIKITGIQIKYTYFEYLVMGYFQQAIKMFGKKSVA

Ga0334878_002636

Ga0334878_002636_687_791

F061012

MQAQYEMKVQVIRSKGRATRLFVNVPLPLAAALDL

Ga0334878_006312

Ga0334878_006312_259_609

F059491

MYSLNKLTDDNIPIPITHICKPERLGKDMTGLELHEFGLALFMTFIEVQNGKLRAINMNPENGAPNVLVEDYQKVLLYVWVKTDLAPNIPVYVPNETHDVITEISKQYRARPCFASI

Ga0334878_007178

Ga0334878_007178_145_540

F091904

MLPNAGATMPGQNQPESHEVPVGSERTLRRQDDTARFIERFEVLTGFRVHSTSREGLPREFLARTLPAPDILVGQYGYELEPRTHNALCRYEPGRQADRWTYGRLLEIRGFGVFSLLDLLEVLAKHGIRST

Ga0334878_007886

Ga0334878_007886_307_570

F012522

STKRTRSLDERFAQRPQTYRRLHEIADLMDRALAGGATLDEAEAMAIEQIRKLGSELLGDWAQARHDQALAQARKDHPQSSKHIKKK

Ga0334878_008124

Ga0334878_008124_312_563

F028913

MHLRSVVGVVELKVWHGKDPRDGHWGSPVRERWGLKAHQQMSPALEEKLAFTATLAGSYAAAGQVAAKWGSDVDDSVIHALVQR

Ga0334878_008642

Ga0334878_008642_438_554

F061012

MQAEYEMKVQVIRSEGRAARLFVNIPMPLAAALDLQAGE

Ga0334878_008885

Ga0334878_008885_2_508

F093188

MTVYLQPNRSASPSLETLVDEIVARGEDSLLEQDIARWRADLRKRLEQIQQHPEQGLGFIEEHVRQATLQLQRLLVQKAMQDKADTVDEECPDCHSRLGHKKRRVPRWVDAYCGKVKLVRTHGWCPHCQHWVFPADRVLGLRDDSTASPLVQEMCALLVSKMPAEQAET

Ga0334878_009516

Ga0334878_009516_1_225

F039551

MANRHRRSHEIQFEFAFDRLHATKLEQVFAILVPNRERRIDESTGLKGESHENSSHIRPCLFGSTEGGEDHSQSD

Ga0334878_009669

Ga0334878_009669_25_537

F102207

MAAPAEAAWGVPSLLPQTHSGPTDQSWMKDVPEKPGERARGKVAVFTFNGDDALEPVRAAVVRTLRKQQLRVTATLRPADNPAQYREMSCFSDLAVFIDGEIGGDGDRRTAVIRLRSGVTGQYFTTAKFSGSMQAITGAIGAALWNRVGSAIMRTCSSASRPRRQVSAPTY

Ga0334878_011564

Ga0334878_011564_316_495

F064436

VKVTEVPAQTGFAEGAIITLTGRFGLTVMVIVFEVAGLPVIQVALEVKTQVTASAFNGI

Ga0334878_012398

Ga0334878_012398_3_500

F009089

FEEWKGLAAQCDETAHLTARERKARASAKLVHPDRLTEAATRYMDCEALAYWARQALERGAEPPPEVVRELERRCPGYLDAGLKARAQDASAATQEWQRLMLWIADHFFQDAQTEGWFEAILIQVRSHPRAIRTMEYADHCDEVWISELPSPYPSFEDWRRDADSY

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300033780: Peat soil microbial communities from Stordalen Mire, Sweden - 715 E3 1-5

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences