Sample 3300033177

Overview

Basic Information
IMG/M Taxon OID	3300033177 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0136119 \| Gp0356199 \| Ga0334883
Sample Name	Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands - Granular Sludge_09_05-R1
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	560229448
Sequencing Scaffolds	8
Novel Protein Genes	9
Associated Families	7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → Methanothrix soehngenii	1
All Organisms → cellular organisms → Bacteria → Thermotogae → Thermotogae → Kosmotogales → Kosmotogaceae → Mesotoga	1
Not Available	3
All Organisms → cellular organisms → Bacteria → Synergistetes → unclassified Synergistota → Synergistetes bacterium ADurb.BinA166	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Sludge Microbial Communities From Methane-Producing Bioreactor In Wageningen University, Netherlands
Type	Engineered
Taxonomy	Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Sludge → Sludge Microbial Communities From Methane-Producing Bioreactor In Wageningen University, Netherlands

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Unclassified

Location Information
Location	Netherlands: Wageningen, Gelderland
Coordinates	Lat. (^o)	51.9691	Long. (^o)	5.6654	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F041155	Metagenome	160	Y
F049068	Metagenome / Metatranscriptome	147	Y
F064732	Metagenome / Metatranscriptome	128	Y
F066219	Metagenome / Metatranscriptome	127	Y
F070092	Metagenome	123	N
F076577	Metagenome	118	N
F080090	Metagenome / Metatranscriptome	115	Y

Family

Category

Number of Sequences

3D Structure?

F041155

Metagenome

160

F049068

Metagenome / Metatranscriptome

147

F064732

Metagenome / Metatranscriptome

128

F066219

Metagenome / Metatranscriptome

127

F070092

Metagenome

123

F076577

Metagenome

118

F080090

Metagenome / Metatranscriptome

115

Scaffold	Taxonomy	Length	IMG/M Link
Ga0334883_1003400	All Organisms → cellular organisms → Bacteria	17198	Open in IMG/M
Ga0334883_1010538	All Organisms → cellular organisms → Bacteria	6285	Open in IMG/M
Ga0334883_1064936	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → Methanothrix soehngenii	1313	Open in IMG/M
Ga0334883_1069054	All Organisms → cellular organisms → Bacteria → Thermotogae → Thermotogae → Kosmotogales → Kosmotogaceae → Mesotoga	1246	Open in IMG/M
Ga0334883_1078010	Not Available	1123	Open in IMG/M
Ga0334883_1182831	Not Available	556	Open in IMG/M
Ga0334883_1190558	Not Available	538	Open in IMG/M
Ga0334883_1197968	All Organisms → cellular organisms → Bacteria → Synergistetes → unclassified Synergistota → Synergistetes bacterium ADurb.BinA166	522	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0334883_1003400

All Organisms → cellular organisms → Bacteria

17198

Open in IMG/M

Ga0334883_1010538

All Organisms → cellular organisms → Bacteria

6285

Open in IMG/M

Ga0334883_1064936

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → Methanothrix soehngenii

1313

Open in IMG/M

Ga0334883_1069054

All Organisms → cellular organisms → Bacteria → Thermotogae → Thermotogae → Kosmotogales → Kosmotogaceae → Mesotoga

1246

Open in IMG/M

Ga0334883_1078010

Not Available

1123

Open in IMG/M

Ga0334883_1182831

Not Available

556

Open in IMG/M

Ga0334883_1190558

Not Available

538

Open in IMG/M

Ga0334883_1197968

All Organisms → cellular organisms → Bacteria → Synergistetes → unclassified Synergistota → Synergistetes bacterium ADurb.BinA166

522

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0334883_1003400	Ga0334883_10034001	F066219	MRKLLAIFLMLVIACIAFSNIVEFFEGIPPVVRFAVGGAIAIYGLSWAYTWLFDPIVVVADTKYGAFNFGPFIVVDTYLWYDASESSRNLVLNHEYVHYIQHALYGPILSLAYPVCYWYSTLKSGDQWSANYWEQQAISLATNDPPAWKPALI
Ga0334883_1010538	Ga0334883_101053811	F041155	EVGVHRGLRADGVMSTVGFDLSAFRSLVMPQFVESII
Ga0334883_1064936	Ga0334883_10649363	F080090	LRTALWSEPLRVDKKLSNADSWREVHEEDQAALRPGLQDISISRT
Ga0334883_1069054	Ga0334883_10690542	F070092	MAINDRLKPVMELLETSKQKIDLIISHGMASDLAIERRKKELYDEVMAAKENAFKEELADLEGEIRKIEYSYREPKKDPTTKLLEFEQIKAKIRSTPSKELKELTHTFQTTGAIPGIPWERPDHVDVLVAELRNRGLDEEADLTWDYAYNKLKVDRPWENNPLYKQLKAQHNKVSVLSGFKDMLKYLDGTNNAVYISETLKYKGG
Ga0334883_1078010	Ga0334883_10780101	F066219	MQSLLREAFLLEVKMKKLLVIVLLIALSSLSFANIIEFFESIPPVVKFGVGAGIALYGLSWAYPWFFDPLIVVWDTDSGAFCFGPFIVIDTYLWYEAPESSRNIVLNHEYVHYIQHAVYGPILSLSYPILAAYSTIKTGNQWDANYWELQAIELSDCSKPDWEPSFVI
Ga0334883_1137244	Ga0334883_11372442	F076577	MFWPENKVISLMEIVFHFGAINYELNNGKKIREMWKEFKENCIDKRLKYINPDPRCTHPVNLDVIDYCWGYARKIDKGEEIGMEELCEGCEFFKKEANNENPTQSN
Ga0334883_1182831	Ga0334883_11828311	F064732	MPKVSEFKWKDMEAEAEAATAAARERCTMPLAQSAERHVRFPSSPMAPGQFIAATATRSIDQPDHPEDTELGN
Ga0334883_1190558	Ga0334883_11905581	F066219	IALSSLSFANIIEFFESIPPVVKYAVGTVITVYAVSWAYSWFFDPIIVVADAKHGAYTWGPIIVVSPNVYHHEVETVLNHVLNHEYVHYIQHAIYGPILSLTYPIFCWYSTIKTGNQWDANYWELQAIELSDISSPAWEPSFVIELE
Ga0334883_1197968	Ga0334883_11979681	F049068	MTVSLVPPDGRDPEEVIAAFRALQACGYDDVEIGSAEQGGKQHLLLIGLDGEARFGDRQIGCIAVLPVVVD

Scaffold ID

Protein ID

Family

Sequence

Ga0334883_1003400

Ga0334883_10034001

F066219

MRKLLAIFLMLVIACIAFSNIVEFFEGIPPVVRFAVGGAIAIYGLSWAYTWLFDPIVVVADTKYGAFNFGPFIVVDTYLWYDASESSRNLVLNHEYVHYIQHALYGPILSLAYPVCYWYSTLKSGDQWSANYWEQQAISLATNDPPAWKPALI

Ga0334883_1010538

Ga0334883_101053811

F041155

EVGVHRGLRADGVMSTVGFDLSAFRSLVMPQFVESII

Ga0334883_1064936

Ga0334883_10649363

F080090

LRTALWSEPLRVDKKLSNADSWREVHEEDQAALRPGLQDISISRT

Ga0334883_1069054

Ga0334883_10690542

F070092

MAINDRLKPVMELLETSKQKIDLIISHGMASDLAIERRKKELYDEVMAAKENAFKEELADLEGEIRKIEYSYREPKKDPTTKLLEFEQIKAKIRSTPSKELKELTHTFQTTGAIPGIPWERPDHVDVLVAELRNRGLDEEADLTWDYAYNKLKVDRPWENNPLYKQLKAQHNKVSVLSGFKDMLKYLDGTNNAVYISETLKYKGG

Ga0334883_1078010

Ga0334883_10780101

F066219

MQSLLREAFLLEVKMKKLLVIVLLIALSSLSFANIIEFFESIPPVVKFGVGAGIALYGLSWAYPWFFDPLIVVWDTDSGAFCFGPFIVIDTYLWYEAPESSRNIVLNHEYVHYIQHAVYGPILSLSYPILAAYSTIKTGNQWDANYWELQAIELSDCSKPDWEPSFVI

Ga0334883_1137244

Ga0334883_11372442

F076577

MFWPENKVISLMEIVFHFGAINYELNNGKKIREMWKEFKENCIDKRLKYINPDPRCTHPVNLDVIDYCWGYARKIDKGEEIGMEELCEGCEFFKKEANNENPTQSN

Ga0334883_1182831

Ga0334883_11828311

F064732

MPKVSEFKWKDMEAEAEAATAAARERCTMPLAQSAERHVRFPSSPMAPGQFIAATATRSIDQPDHPEDTELGN

Ga0334883_1190558

Ga0334883_11905581

F066219

IALSSLSFANIIEFFESIPPVVKYAVGTVITVYAVSWAYSWFFDPIIVVADAKHGAYTWGPIIVVSPNVYHHEVETVLNHVLNHEYVHYIQHAIYGPILSLTYPIFCWYSTIKTGNQWDANYWELQAIELSDISSPAWEPSFVIELE

Ga0334883_1197968

Ga0334883_11979681

F049068

MTVSLVPPDGRDPEEVIAAFRALQACGYDDVEIGSAEQGGKQHLLLIGLDGEARFGDRQIGCIAVLPVVVD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300033177: Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands - Granular Sludge_09_05-R1

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences