3300033176: Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands - Granular Sludge_27_06-R1

Overview

Basic Information

• IMG/M Taxon OID: 3300033176
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0136119 | Gp0356202 | Ga0334886
• Sample Name: Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands - Granular Sludge_27_06-R1
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 517395148
• Sequencing Scaffolds: 6
• Novel Protein Genes: 7
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	1
Not Available	2
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → Methanothrix soehngenii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Syntrophomonadaceae → unclassified Syntrophomonadaceae → Syntrophomonadaceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Sludge Microbial Communities From Methane-Producing Bioreactor In Wageningen University, Netherlands
• Type: Engineered
• Taxonomy: Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Sludge → Sludge Microbial Communities From Methane-Producing Bioreactor In Wageningen University, Netherlands

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: Netherlands: Wageningen, Gelderland
• Coordinates
  • Lat. (^o): 51.9691
  • Long. (^o): 5.6654
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005744	Metagenome / Metatranscriptome	391	Y
F070092	Metagenome	123	N
F079824	Metagenome / Metatranscriptome	115	N
F080090	Metagenome / Metatranscriptome	115	Y
F104571	Metagenome / Metatranscriptome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0334886_1031527	All Organisms → Viruses → Predicted Viral	2363
Ga0334886_1037447	Not Available	2039
Ga0334886_1046210	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → Methanothrix soehngenii	1700
Ga0334886_1057105	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium	1428
Ga0334886_1151845	Not Available	642
Ga0334886_1155333	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Syntrophomonadaceae → unclassified Syntrophomonadaceae → Syntrophomonadaceae bacterium	631

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0334886_1031527	Ga0334886_10315275	F104571	MIDTLKVFTDDFKISDNAGLFVQPATVNYETGETKEYNLFRKDNGAWVTGAKAYANTGNYQLTIKPIIGNESGKVLLFLQTSLPKIIHGENYQALNNDETMQAIDVIADDLNNRGVGVNLQECKTSRIDLFRMASANNPFSSYAPVFRLLNAKRSHTTDYGTTFTWANTQRELCVYDKATEMRNRGVKASALPTNAIRFEYRLKTSKVCKNETGAGNVRQLVNNLDNLQDVYRQALENSIFSLDAKALATVTANELENGLRVYSKRYGGAFVNRFFRDFGAYALGRLTGVETVKSVLSSVLDDRYKLWRHSKL
Ga0334886_1037447	Ga0334886_10374471	F005744	MDEMFEIIKAGAPNGPPEQALYRIQQTYSDGSGGRLNVDWDGLLRLHEVIHDRIALEGRVCETCGTKGCHRPATWEIECRGAGVASCLIYSCDDHCPDPAILSPQDEIRRLVEER
Ga0334886_1037447	Ga0334886_10374476	F005744	TMDEMFEIIKAGAPDGPPEQALYRIQQTYPDGSGGRLNVDWDGLRRLHGLIHDRIALEGYACETCDTKGCHRPATWEIECRGVGVSGRLIYSCDEHAPDEAILSPQDEIRRLVENRNMEE
Ga0334886_1046210	Ga0334886_10462104	F080090	QRYEHDRHWSEPLRVDKKLSNADSWREVHEEDQAALRPGLQDISISRT
Ga0334886_1057105	Ga0334886_10571053	F079824	MIYGFFGSIPGSPHNRGAHALRGNGKTMCLTFTGYLDYLNGRRVISNYKTVFSEYIPIQEIADMVMSENIKDTTILLSEIQVYINSLGADSEVLKTFIGSVIGQSRKRNVDVHYDTQRYGDIHPRLRVQTDRAYLPRKFHFDGSPCSVDRCEKVHIIYLYMHDPYQYEPITHIRADVVGQLYDSNEIVAVPPKRVRKRKKKEDE
Ga0334886_1151845	Ga0334886_11518451	F070092	MAINDRLKPVMELLETNRQKLGLMISHGMASDLAIERRKKELYDEVMTAKENAFKEELADLEGEIRKIKDSYREPKKDPTTKLLEFEQIKAKIRSTPSKELKELTHKFQNTGAIPGIPWERPDHVDVLVAELRNRGLDEEADLTWDYAYNKLKVDRPW
Ga0334886_1155333	Ga0334886_11553331	F079824	MIYGFFGSIPGSPHNRGNHALRGNGKTMCLTFTGYLDYLNGRRVISNYKTVFSEYIPIQEIADMVMSENIKDTTILLSEIQVYINSLGADSEVLKTFIGSVIGQSRKRNVDVHYDTQRYGDIHPRLRVQTDRAYLPRKFHFDGSVCSVDRCEKVHIIYLYMH