3300033172: Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands - Granular Sludge_3_08-R1

Overview

Basic Information

• IMG/M Taxon OID: 3300033172
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0136119 | Gp0356204 | Ga0334888
• Sample Name: Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands - Granular Sludge_3_08-R1
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 523310550
• Sequencing Scaffolds: 6
• Novel Protein Genes: 7
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	5
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → Methanothrix soehngenii	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Sludge Microbial Communities From Methane-Producing Bioreactor In Wageningen University, Netherlands
• Type: Engineered
• Taxonomy: Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Sludge → Sludge Microbial Communities From Methane-Producing Bioreactor In Wageningen University, Netherlands

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: Netherlands: Wageningen, Gelderland
• Coordinates
  • Lat. (^o): 51.9691
  • Long. (^o): 5.6654
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015885	Metagenome / Metatranscriptome	251	Y
F070092	Metagenome	123	N
F073228	Metagenome / Metatranscriptome	120	N
F080090	Metagenome / Metatranscriptome	115	Y
F089495	Metagenome / Metatranscriptome	109	N
F103499	Metagenome / Metatranscriptome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0334888_1023408	Not Available	3135
Ga0334888_1044764	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → Methanothrix soehngenii	1785
Ga0334888_1065530	Not Available	1284
Ga0334888_1144405	Not Available	654
Ga0334888_1168249	Not Available	574
Ga0334888_1170364	Not Available	568

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0334888_1023408	Ga0334888_10234085	F015885	MTIGCNQIVDCILKNCDNMVQGIKDTVYFINHEHVDKDNCTFDPENPLLLTQLVLKTVSPPAYAYCISGYNQSNEHSVAMVKRRYQKVWDHNLIFRVFDNTPEVKAWVNDVANSRFLVIIENNYNKAGLGRTVYEVLGWDMGLELNAAERNPNDEEMMGAWLLTAGC
Ga0334888_1044764	Ga0334888_10447644	F080090	ERKTKKWSEPLRVDKKLSNADSWREVHEEDQAALRPGLQDISISRT
Ga0334888_1065530	Ga0334888_10655303	F073228	MAITIGDIMDANNSKYGEFLYRIVMVYPHNLEVDKTELARLIKINNNTLTFERKNGEKFRIDERDIEHMEIFKSPNYRGGI
Ga0334888_1081052	Ga0334888_10810521	F103499	GSGGRLNVDWDGLRRLHGLIHDRIALEGYACETCDTKGCHRPATWEIECRGVGVSGRLIYSCDEHAPDEAILSPQDEIRRLVENRNMEE
Ga0334888_1144405	Ga0334888_11444051	F089495	MGRPYLRKSHVDVRFYDGTATTPYTLDITGYSDIPELPEPVIDVAAEPYVVGGNFNSIEEGDDAVTLPEFAITIDINDADVVTGKYAIDQWFANHKEGSGMTALVSTNDGSAYLKKSIDGTTISANLSTDYFTIGLKVLFDNGGSGKAFGKDFKYIRPIDAKFSTSGKAQVTIRGQILGAPTDITA
Ga0334888_1168249	Ga0334888_11682491	F070092	AINDRLKPVMELLETNKQKLGLMISHGMASDLAIERRKKELYDEVMTAKENAFKEELAELEGEIKKIEYSYHEPKKDPTTKLLEFEQIKAKIRSTPSKELKELTHTFQNTGAIPGIPWERPDHVDVLVAELRNRGLDEEADITWDYAYNKLKVDRPWENNPLYKELKSQHNKVSVLAGFKDMLKYLDGTN
Ga0334888_1170364	Ga0334888_11703641	F070092	MAINDRLKPVMELLETNRQKLGLMISHGMASDLAIERRKKELYDEVMTAKENAFKEELAELEGEIRKIEDSYREPKKDPTTKLLEFEQIKAKIRSTPSKELKELTHKFQNTGAIPGIPWERPDHVDVLVAELRNRGLDEEADITWDYAYNKLKVDRPWENNPLYKELKSQ