3300033165: Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands - Granular Sludge_15_04-R3

Overview

Basic Information

• IMG/M Taxon OID: 3300033165
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0136119 | Gp0356208 | Ga0334892
• Sample Name: Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands - Granular Sludge_15_04-R3
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 370207894
• Sequencing Scaffolds: 8
• Novel Protein Genes: 8
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
Not Available	5
All Organisms → cellular organisms → Bacteria → Terrabacteria group	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Sludge Microbial Communities From Methane-Producing Bioreactor In Wageningen University, Netherlands
• Type: Engineered
• Taxonomy: Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Sludge → Sludge Microbial Communities From Methane-Producing Bioreactor In Wageningen University, Netherlands

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: Netherlands: Wageningen, Gelderland
• Coordinates
  • Lat. (^o): 51.9691
  • Long. (^o): 5.6654
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011593	Metagenome / Metatranscriptome	289	Y
F022008	Metagenome / Metatranscriptome	216	Y
F025315	Metagenome	202	Y
F031354	Metagenome / Metatranscriptome	182	Y
F066219	Metagenome / Metatranscriptome	127	Y
F069687	Metagenome	123	Y
F080090	Metagenome / Metatranscriptome	115	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0334892_1004889	All Organisms → cellular organisms → Bacteria	7937
Ga0334892_1008001	Not Available	5453
Ga0334892_1025108	Not Available	2219
Ga0334892_1033749	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1744
Ga0334892_1080527	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon	829
Ga0334892_1095361	Not Available	715
Ga0334892_1101969	Not Available	674
Ga0334892_1135642	Not Available	523

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0334892_1004889	Ga0334892_10048895	F069687	MDELAEKIGKILDQFAQEELGNRLSQFAMISLKEMIKNGIQNYKPKGDDRSDKK
Ga0334892_1008001	Ga0334892_10080011	F031354	YTGSNKVTKTEGKGIWLMKTTFDISDILYPIINVTSVTSTIDGRVYRDKKPLNSELQDIIVIPLSNFNGDEVIQEATFMVNCFCKNFDNGLPNITKLKTITDAVIKVIEDYSATSNYYVFDITNQTVMQDTDQISMSYVNLRINCYIEK
Ga0334892_1025108	Ga0334892_10251084	F080090	MQQGDGWSEPLRVDKKLSNADSWREVHEEDQAALR
Ga0334892_1033749	Ga0334892_10337493	F025315	MQNYLLVTFEILLVVVVPLLVLYLKGNWPLRKVIPSLVIIPVIWYFTYAPIHELSHAAGTYLVGGKVIAYRLIPRFWLGEFSGAWATPGGFTQSWQQLTSSAFPYLLDIVCLVVAIFVLRRRFSRNPFLAGLVFMLVCLRPAFDIVGESIGFLTGWRGDLYFIQLIAGSFALWSLILLSIGLSGYLISSTMRHVISFSKHEISQNTI
Ga0334892_1080527	Ga0334892_10805272	F011593	MTDNYFAAPEWCLGCPHPIYDGRRGEWDWYCRQHSPTGIKCSNVAVLKDRCQRVERYYYRRGTSAA
Ga0334892_1095361	Ga0334892_10953612	F022008	MCKTCIERGIAMTVTEIEVLREALADLSKQVQALSEDNRASFGRIYDRLTKIETQMSERECQFRKFEKSLDNHEARIRSVEGELGTLRDVPERLWRVSMSNSKLTGMVAAAGGMGGLVATLIVKVLGD
Ga0334892_1101969	Ga0334892_11019692	F031354	MKTTFDISDILYPIINVTSVTGTIDGRVYRDKKPLNSELQDIVIIPLTNYNGDEIIQFPVYMVNCFCKNFDNGLPNITKLKTITDAVIKVIEDYSATSNYYVFEITNQTLMQDTDQISM
Ga0334892_1135642	Ga0334892_11356421	F066219	KKLLVIVLLIALSSLSFANIIEFFESIPPVVKFGVGAGIALYGLSWAYPWFFDPLIVVWDTDSGAFCFGPFIVIDTYLWYEAPESSRNIVLNHEYVHYIQHAVYGPILSLSYPILAAYSTIKTGNQWDANYWELQAIELSDCSKHDWEPSFVIELE