3300033162: Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands - Granular Sludge_15_08-R3

Overview

Basic Information

• IMG/M Taxon OID: 3300033162
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0136119 | Gp0356217 | Ga0334901
• Sample Name: Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands - Granular Sludge_15_08-R3
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 318546313
• Sequencing Scaffolds: 13
• Novel Protein Genes: 17
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	2
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon ADurb.Bin009	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Atribacterota → unclassified Atribacterota → Candidatus Atribacteria bacterium	1
Not Available	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Thermotogae → Thermotogae → Kosmotogales → Kosmotogaceae → Mesotoga	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Smithella → unclassified Smithella → Smithella sp. SCADC	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → unclassified Firmicutes sensu stricto → Firmicutes bacterium ADurb.Bin193	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Sludge Microbial Communities From Methane-Producing Bioreactor In Wageningen University, Netherlands
• Type: Engineered
• Taxonomy: Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Sludge → Sludge Microbial Communities From Methane-Producing Bioreactor In Wageningen University, Netherlands

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: Netherlands: Wageningen, Gelderland
• Coordinates
  • Lat. (^o): 51.9691
  • Long. (^o): 5.6654
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022008	Metagenome / Metatranscriptome	216	Y
F031354	Metagenome / Metatranscriptome	182	Y
F055749	Metagenome / Metatranscriptome	138	N
F065263	Metagenome	128	Y
F066219	Metagenome / Metatranscriptome	127	Y
F070092	Metagenome	123	N
F071725	Metagenome	122	N
F076577	Metagenome	118	N
F083694	Metagenome	112	Y
F093482	Metagenome	106	N
F103496	Metagenome / Metatranscriptome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0334901_1002384	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	16247
Ga0334901_1013325	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon ADurb.Bin009	3519
Ga0334901_1013852	All Organisms → cellular organisms → Bacteria	3397
Ga0334901_1017014	All Organisms → cellular organisms → Bacteria → Atribacterota → unclassified Atribacterota → Candidatus Atribacteria bacterium	2810
Ga0334901_1022873	Not Available	2108
Ga0334901_1022959	Not Available	2101
Ga0334901_1026261	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1842
Ga0334901_1027717	All Organisms → cellular organisms → Bacteria → Thermotogae → Thermotogae → Kosmotogales → Kosmotogaceae → Mesotoga	1744
Ga0334901_1031031	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Smithella → unclassified Smithella → Smithella sp. SCADC	1551
Ga0334901_1036871	All Organisms → cellular organisms → Bacteria → Thermotogae → Thermotogae → Kosmotogales → Kosmotogaceae → Mesotoga	1298
Ga0334901_1043148	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → unclassified Firmicutes sensu stricto → Firmicutes bacterium ADurb.Bin193	1106
Ga0334901_1045426	Not Available	1051
Ga0334901_1051194	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	934

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0334901_1002384	Ga0334901_10023849	F065263	MEAALYAKLIISSLVMIIAGWLFQDQADRFVGRFAKFIQDSLTVILIIAGLVCTVSVIAVIWINN
Ga0334901_1013325	Ga0334901_10133251	F055749	MNLIMIIAVGILTLVAIITVGPVVGGSIELAMPEVAEDSPWNPTTNDNLPEGAATWTQLIPLVVLAVLALIIGLVIMYFRNAAR
Ga0334901_1013852	Ga0334901_10138524	F022008	MTVSEIETLREALMDLSKQVQALSEDNRASFGRIYDRLTKIETQMSERECQFRKFEKSLDNHEARIRSVEGELGTLRDVPERLWRVSMSNSKLTGMVAAAGGMGGLVATLIVKVLGD
Ga0334901_1017014	Ga0334901_10170141	F076577	MEIAFHFGAISYAPSNGKKRREMWKEFKENAIDKRLKYVNPDRRCGHPVNLDTLDYCWGYAHKIDKGEEIGMEELCEGCEFFREEVKNENPTQ
Ga0334901_1017014	Ga0334901_10170142	F071725	MKTLLNKPESEYLNLGSLDQELSWVLKIYSSGKINDLIYDGLLLYAHDEEIKAIREKLEKKEINEVGLFQELEKLSKVESLPG
Ga0334901_1017014	Ga0334901_10170144	F093482	MEERTLDSLWEKIEKENPVLWAQMDRFYGPMSKKILLMEWNRVKHKCKKDWRFEKLIDDWLIQSRLRKHGGKCLFEHKKRSRA
Ga0334901_1022873	Ga0334901_10228733	F031354	MKTTFDISDILYPIINVTSVTSTIDGRVYRDKKPLNSELQDIIVIPLSNFNGDEIIQDATFMVNCFCKNFDNGLPNITKLKTITDAVIKVIEDYSATSNYYVFDITNQTVMQDTDQISMSYVNLRINCYIEK
Ga0334901_1022959	Ga0334901_10229592	F066219	MQSLLREAFLLEVKMKKLLVIVLLIALSSLSFANIIEFFESIPPVVKFGVGAGIALYGLSWAYPWFFDPLIVVWDTDSGAFCFGPFIVIDTYLWYEAPESSRNIVLNHEYVHYIQHAVYGPILSLSYPILAAYSTIKTGNQWDANYWELQAIELSDCSKHDWEPSKVFDWNSKRLLTISPIGE
Ga0334901_1026261	Ga0334901_10262613	F103496	MPFADGVRKLPLTKLIALCFTMFVCILIVLDVTTLCPLTERSADLLKWLGSTIIVGYFGKSAYEHNLNVRKGEKS
Ga0334901_1026261	Ga0334901_10262614	F022008	MCIPCIERGMAMTVTEIEMLREALMDLSKQVQALSEDSRTSFGRIYDRLTTIETQMSERECQFRKFEKALENHETRIRSVEGELGTLRDVPERLWRVSMSNAKLTGMIAAAGGMGGLVATLIVQILGD
Ga0334901_1027717	Ga0334901_10277171	F070092	MAINDRLKPVMELLETNRQKLGLMISHGMASDLAIERRKKELYDEVMTAKENAFKEELAELEGEIRKIEDSYREPKKDPTTKLLEFEQIKAKIRSTPSKELKELTHKFQNTGAIPGIPWERPDHVDVLVAELRNRGLDEEADITWDYAYNKLKVDRPWENNPLYKELKSQHNKVSVLAGFTDMLKFLDGTNNAVYISETLKYKGG
Ga0334901_1031031	Ga0334901_10310313	F083694	METDVVTKLKNRQLARLLTHLERTGQLTVELEKTLKRSFRYTFEDVEALVQRLGLDKENKDGNLKD
Ga0334901_1036871	Ga0334901_10368711	F070092	MAINDRLKPVMELLETNRQKIGLMISHGMASDLAIERRKKELYDEVMTAKENAFKEELADLEGEIRKIEYSYREPKKDPTTKLLEFEQIKAKIRSTPSKELKELTHTFQTTGAIPGIPWERPDHVDVLVAELRNRGLDEEADLTWDYAYNKLKVDRPWENNPLYKQLKAQHNKVSVLAGFKDMLKYLDGTNNAVYISETLKYKGG
Ga0334901_1043148	Ga0334901_10431482	F103496	MSINDSVRQMPLTKLIALCFTVFVCVLIVLDVTTLCPLTERSADLVKWLGSTIIVSYFGKSAYEHNVNVKKGEKS
Ga0334901_1043148	Ga0334901_10431483	F022008	MTVNEIEVLQEALTELSKQVKSLSDDNRASFGRIYDRLTKIETQMTERECQFKKFEKILDNHETRIRTVEGELGTLRDVPERLWRVSMSNAKLTGMVAAAGGVGGLVATIIVKMLGE
Ga0334901_1045426	Ga0334901_10454261	F070092	MAINDRLKPVMELLETNKQKLGLMISHGMASDLAIERRKKELYDEVMTAKENAFKEELAELEGEIKKIEYSYHEPKKDPTTKLLEFEQIKAKIRSTPSKELKELTHTFQNTGAIPGIPWERPDHVDVLVAELRNRGLDEEADITWDYAYNKLKVDRPWENNPLYKELKSQHNKVSVLAGFKDMLKYLDGTNNAVYISETLKYKGG
Ga0334901_1051194	Ga0334901_10511941	F065263	MEAEFYGKLIISSLAVIIAGWLFQDQADRFVGRFAKFIQDSLTVILIIAGLVCTVSVIAVIWIN