3300033161: Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands - Granular Sludge_09_05-R3

Overview

Basic Information

• IMG/M Taxon OID: 3300033161
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0136119 | Gp0356209 | Ga0334893
• Sample Name: Sludge microbial communities from methane-producing bioreactor in Wageningen University, Netherlands - Granular Sludge_09_05-R3
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 323201248
• Sequencing Scaffolds: 22
• Novel Protein Genes: 27
• Associated Families: 21

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	5
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix	1
All Organisms → cellular organisms → Bacteria → Synergistetes → unclassified Synergistota → Synergistetes bacterium ADurb.BinA166	1
All Organisms → cellular organisms → Bacteria → Atribacterota	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon ADurb.Bin009	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	1
Not Available	8
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Thermotogae → Thermotogae → Kosmotogales → Kosmotogaceae → Mesotoga → Mesotoga infera	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → unclassified Ignavibacteriota → Ignavibacteria bacterium ADurb.Bin266	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Sludge Microbial Communities From Methane-Producing Bioreactor In Wageningen University, Netherlands
• Type: Engineered
• Taxonomy: Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Sludge → Sludge Microbial Communities From Methane-Producing Bioreactor In Wageningen University, Netherlands

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: Netherlands: Wageningen, Gelderland
• Coordinates
  • Lat. (^o): 51.9691
  • Long. (^o): 5.6654
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004383	Metagenome / Metatranscriptome	440	Y
F005744	Metagenome / Metatranscriptome	391	Y
F011593	Metagenome / Metatranscriptome	289	Y
F022008	Metagenome / Metatranscriptome	216	Y
F031354	Metagenome / Metatranscriptome	182	Y
F034940	Metagenome / Metatranscriptome	173	Y
F048390	Metagenome / Metatranscriptome	148	Y
F055749	Metagenome / Metatranscriptome	138	N
F059653	Metagenome / Metatranscriptome	133	Y
F061390	Metagenome / Metatranscriptome	132	Y
F066219	Metagenome / Metatranscriptome	127	Y
F071725	Metagenome	122	N
F072892	Metagenome	121	N
F076577	Metagenome	118	N
F082560	Metagenome	113	N
F083694	Metagenome	112	Y
F089495	Metagenome / Metatranscriptome	109	N
F093482	Metagenome	106	N
F095532	Metagenome / Metatranscriptome	105	N
F099347	Metagenome / Metatranscriptome	103	N
F103496	Metagenome / Metatranscriptome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0334893_1002380	All Organisms → cellular organisms → Bacteria	14270
Ga0334893_1003397	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix	10193
Ga0334893_1003551	All Organisms → cellular organisms → Bacteria	9753
Ga0334893_1003679	All Organisms → cellular organisms → Bacteria	9428
Ga0334893_1004764	All Organisms → cellular organisms → Bacteria → Synergistetes → unclassified Synergistota → Synergistetes bacterium ADurb.BinA166	7323
Ga0334893_1005318	All Organisms → cellular organisms → Bacteria → Atribacterota	6635
Ga0334893_1009258	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	4000
Ga0334893_1010086	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon ADurb.Bin009	3693
Ga0334893_1010795	All Organisms → cellular organisms → Bacteria	3472
Ga0334893_1010877	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	3447
Ga0334893_1011435	Not Available	3297
Ga0334893_1011820	All Organisms → cellular organisms → Bacteria	3201
Ga0334893_1014043	All Organisms → Viruses → Predicted Viral	2762
Ga0334893_1024755	Not Available	1734
Ga0334893_1045219	All Organisms → cellular organisms → Bacteria → Thermotogae → Thermotogae → Kosmotogales → Kosmotogaceae → Mesotoga → Mesotoga infera	1065
Ga0334893_1047658	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → unclassified Ignavibacteriota → Ignavibacteria bacterium ADurb.Bin266	1021
Ga0334893_1055776	Not Available	897
Ga0334893_1064476	Not Available	798
Ga0334893_1074222	Not Available	712
Ga0334893_1099259	Not Available	563
Ga0334893_1101500	Not Available	553
Ga0334893_1112034	Not Available	512

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0334893_1002380	Ga0334893_10023804	F083694	MEQMDKIEKLKNRQLARLLAHLKKTGQLTVELEKDLKRAYRYAFEDVEELIQRLDKEKGNGEPSN
Ga0334893_1003397	Ga0334893_100339712	F048390	MVRFVRTLQHRITKQGRDFYQLSIPPQVAEALNLKDGGPVSIRVQPIKRGEVQIILAAADSEV
Ga0334893_1003551	Ga0334893_100355116	F099347	EQKDLEILKAIVSDCEDFINAHGYQFKCYSMDSKSWKELYKKNREKRKKIADGMCEFCGRKKDVHCHHLIKRGKLNLYNDIRLLRMLCADCHQLFH
Ga0334893_1003679	Ga0334893_10036792	F061390	LEKETRREGSVGMVIISKEEAERLDRLVAQFGQRTVMEALEAKMMGNWSVIYFPDVDSWEVSDYGDRNFVIKDGGKCNCGKGFGKNGSCIHQVLVELKKWDLEDELGVE
Ga0334893_1004764	Ga0334893_100476411	F004383	MPADENPLERAFMARVRADEYAQELNRLQKEFDERPDVLDLKRRIERCEEVRRQCIAQAQAEGVTKQGSFRLKFRTRKTRTVIPERFFARFGAETFVRCCTVAIGKAEALLGKAALDDCCEVEVKDLGATVEYVRPEGSE
Ga0334893_1005318	Ga0334893_100531810	F093482	VEERTLDELWERIEKEDPVLWAQMEKFYGPMSKKILLMKWNRVKHKCKKDWRFEKLIDDWLIQSRLRKHGGKCLFEHKKRSRA
Ga0334893_1005318	Ga0334893_100531812	F071725	MKTLLNKPESEYLNLGSLDQELSWVLKIYSSGKINDLIYDGLLLYAHDEEIKAIREKWERKEINKVGLFHELEKLSKVESLPG
Ga0334893_1005318	Ga0334893_100531813	F076577	MFWPENKVISLMEIVFHFGAINYELNNGKKIREMWKEFKENCIDKRLKYINPDPRCTHPVNLDVIDYCWGYARKIDKGEEIGMEELCEGCEFFREEVKNENPTQ
Ga0334893_1005318	Ga0334893_100531814	F072892	MDINLLKTISTRLFGLYSQFKSIVSDLETNNTLDNREWAGELLNNLATELYYEANCLTDVLYPPRKEEKDETMFKIDGIIDAERNPMSEDEFFELFIKWAEENKLQFGGGIGAYREEEEDVLAGK
Ga0334893_1009258	Ga0334893_10092586	F103496	VIEMPFADGVRKLPLTKLIALCFTMFVCILIVLDVTTLCPLTERSADLLKWLGSTIIVGYFGKSAYEHNLNVRKGEKS
Ga0334893_1009258	Ga0334893_10092587	F022008	MTVTEIEVLKEALADLSKQVKTLSDDNRASFGRIYDRLTKIETQMSERECQFKKFERALDNHETRIRTVEGELGTLRDVPERLWRVSMSNAKLTGMIAAAGGMGGLVATLIVQILGD
Ga0334893_1010086	Ga0334893_10100867	F055749	MAKRAENPMNLIMIISVGILTLVAIITVGPVVGGSIELAMPEVAADSPWNPSTNDNLPEGAATWTQLIPLVVLAVLALIIGLVIMYFRNAAR
Ga0334893_1010795	Ga0334893_10107954	F011593	MTDNYLAAPEWCLGCPHPIYDGRRGEWDWYCRQHSPTGIKCSNVAVLKDRCQRVERYYYRRGTSAA
Ga0334893_1010795	Ga0334893_10107958	F034940	MGNDCWYYRAQYAGMTKVCMRQSIVECGQIKRFGLCPIPPDSEAWRRCGFAIGQHEIPMMVEE
Ga0334893_1010877	Ga0334893_10108772	F005744	MDDEWYEIIKAGPADAPPEQALYRIQQTYPDGSGGRLNIDWDGLLRVHELIHDRIALEGYVCGTCDTKGCHRPATWEIECRGAGVSGRLIYSCDEHCPDPAILSPQDEIRRLVEE
Ga0334893_1011435	Ga0334893_10114351	F031354	YPIINVTSVTGTIDGRVYRDKKPLNSELQDIVIIPLTNYNGDEIIQFPVYMVNCFCKNFDNGLPNITKLKTITDAVIKVIEDYSATSNYYVFEITNQTLMQDTDQISMSYVNLRINCYIE
Ga0334893_1011820	Ga0334893_10118202	F059653	LTNLEALQSQTEYSNDNLLEKILLDNGLTASATYAAGNSKDIDLCAASLYFTLAAHPEFRDGSTSIKYNAVQLIAMARAILQKYGLDEPTVDGAVIW
Ga0334893_1014043	Ga0334893_10140436	F089495	MGRPYLRKSHVDVRFYDGTATTPYTLDITGYSDIPELPEPVIDVAAEPYVVGGNFNSIEEGDDAVTLPEFAITIDINDADVVTGKYAIDQWFANHKEGTGTTALVSTNDGSAYLKKSIDGTTTSANLSTDYFTIGLKVLFDNGGSGKAFGKDFKYIRPIDAKFSTSGKAQVTIRGQILGAPTDITAL
Ga0334893_1024755	Ga0334893_10247555	F103496	MPFADGVRRLPLTKLIALWFTMFVCVIIILDVTTLCPLTERSADLLKWLGSTIIVGYFGKSAYEHGVNIKKSDQS
Ga0334893_1045219	Ga0334893_10452192	F066219	MQSLLREAFLLEVKMKKLLVIVLLIALSSLSFANIIEFFESIPPVVKFGVGAGIALYGLSWAYPWFFDPLIVVWDTDSGAFCFGPFIVIDTYLWYEAPESSRNIVLNHEYVHYIQHAVYGPILSLSYPILAAYSTIKTGNQWDANYWELQAIELSDCSKPDWEPSF
Ga0334893_1047658	Ga0334893_10476581	F095532	MNRQNVIVVIAPILEVWGNFKKLCKAKGFDVLPYHSLKSKPFPIIYNDWIIHKVPFL
Ga0334893_1055776	Ga0334893_10557763	F082560	VTEKSIVKKIQEWFKSKGGVCHKVHGGPMSAGFPDLIGCIEADAWVVEVKVPNAKPRVPKSVRAGYPEEMQEWMEQGATVLQAKTLYDWQLAGAVALVATSVEDMERMFEKEYFGYKIGGKYYGRIGNA
Ga0334893_1064476	Ga0334893_10644762	F031354	MKTTFDISDILYPIINVTSVTSTIDGRVYRDKKPLNSELQDIIVIPLSNFNGDEVIQEATFMVNCFCKNFDNGLPNITKLKTITDAVIKVIEDYSATSNYYVFDITNQTVMQDTDQISMSYVNLRINCYIEK
Ga0334893_1074222	Ga0334893_10742221	F082560	DGGIGVTEKSIVKKIQEWFKSKGGVCYKVHGGPMSAGFPDLIGCIDADTWVVEAKVPNAKPRVPKSVRVGYPEEMQEWMEQGATVLQAKTLYDWQRAGAVALVATSVEDMERRFEKEYLSFKIGGEYYGRIGNA
Ga0334893_1099259	Ga0334893_10992592	F022008	MCIPCIERGMAMTVTEIEMLREALMDLSKQVQALSEDSRTSFGRIYDRLTTIETQMSERECQFRKFEKALENHETRIRSVEGELGTLRDVPERLWRVSMSNAKLTGMIAAAGGM
Ga0334893_1101500	Ga0334893_11015002	F082560	DGGIGVTEKSIVKKIQEWFKSKGGVCYKVHGGPMSAGFPDLIGCIEADAWVVEVKVPNAKPRVPKFVRAGYPEEMQKWMEQGATVLQAKTLYDWQRAGAVALVATSVEDMERRFEKEYFGYKIGGKYYGRIGNA
Ga0334893_1112034	Ga0334893_11120341	F022008	MTVSEIEMLREALADLSKQVQALSEDNRTSFGRIYDRLTKIETQMSERECQFRKFEKALDNHETRIRSVEGELGTLRDVPERLWRVSMSNSKLTG