NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300032599

3300032599: Metatranscriptome of Cow rumen microbial communities from the University of Illinois at Urbana-Champaign, USA - Cow X-1 switchgrass (Eukaryote Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300032599 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0085735 | Gp0095237 | Ga0352977
Sample NameMetatranscriptome of Cow rumen microbial communities from the University of Illinois at Urbana-Champaign, USA - Cow X-1 switchgrass (Eukaryote Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size85353047
Sequencing Scaffolds34
Novel Protein Genes36
Associated Families22

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available24
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriaceae → Eubacterium → unclassified Eubacterium → Eubacterium sp.8
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Litostomatea → Trichostomatia → Entodiniomorphida → Ophryoscolecidae → Entodinium → Entodinium caudatum1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameFungi-Associated Bovine Rumen Microbial Communities From The University Of Illinois At Urbana-Champaign, Usa, For Metatranscriptome Analysis
TypeHost-Associated
TaxonomyHost-Associated → Mammals → Digestive System → Foregut → Unclassified → Fungi-Associated Bovine Rumen → Fungi-Associated Bovine Rumen Microbial Communities From The University Of Illinois At Urbana-Champaign, Usa, For Metatranscriptome Analysis

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Unclassified

Location Information
LocationUSA: Illinois
CoordinatesLat. (o)40.102108Long. (o)-88.227299Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

Associated Scaffolds

Sequences


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