Sample 3300031476

Basic Information
IMG/M Taxon OID	3300031476 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0132857 \| Gp0330689 \| Ga0314827
Sample Name	Metatranscriptome of soil surface biofilm microbial communities from soil inoculated with nitrogen-fixing consortium DG1, State College, Pennsylvania, United States - MICR_R6 (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Metatranscriptome of soil surface biofilm microbial communities from soil inoculated with nitrogen-fixing consortium DG1, State College, Pennsylvania, United States - MICR_R6 (Metagenome Metatranscriptome)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	37721669
Sequencing Scaffolds	30
Novel Protein Genes	33
Associated Families	28

Dataset Contents

Total Genome Size

37721669

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	1
Not Available	16
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Thermoguttaceae → Thermogutta → Thermogutta terrifontis	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Enterobacter → Enterobacter cloacae complex → Enterobacter hormaechei	3
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1
All Organisms → cellular organisms → Bacteria → Acidobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium

Not Available

All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Thermoguttaceae → Thermogutta → Thermogutta terrifontis

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae

All Organisms → cellular organisms → Bacteria → Proteobacteria

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Enterobacter → Enterobacter cloacae complex → Enterobacter hormaechei

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium

All Organisms → cellular organisms → Bacteria → Acidobacteria

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas

Ecosystem Assignment (GOLD)
Name	Soil Surface Biofilm Microbial Communities From Soil Inoculated With Nitrogen-fixing Consortium Dg1, State College, Pennsylvania, United States
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil → Soil Surface Biofilm Microbial Communities From Soil Inoculated With Nitrogen-fixing Consortium Dg1, State College, Pennsylvania, United States

Ecosystem Assignment (GOLD)

Name

Soil Surface Biofilm Microbial Communities From Soil Inoculated With Nitrogen-fixing Consortium Dg1, State College, Pennsylvania, United States

Type

Environmental

Taxonomy

Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil → Soil Surface Biofilm Microbial Communities From Soil Inoculated With Nitrogen-fixing Consortium Dg1, State College, Pennsylvania, United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → land → biofilm material
Earth Microbiome Project Ontology (EMPO)	Unclassified

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

terrestrial biome → land → biofilm material

Earth Microbiome Project Ontology (EMPO)

Unclassified

Location Information
Location	USA: Pennsylvania
Coordinates	Lat. (^o)	40.7997	Long. (^o)	-77.8629	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

USA: Pennsylvania

Coordinates

Lat. (^o)

40.7997

Long. (^o)

-77.8629

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000203	Metagenome / Metatranscriptome	1619	Y
F000240	Metagenome / Metatranscriptome	1481	Y
F000344	Metagenome / Metatranscriptome	1257	Y
F001633	Metagenome / Metatranscriptome	660	Y
F010686	Metagenome / Metatranscriptome	300	Y
F011252	Metagenome / Metatranscriptome	293	Y
F016001	Metagenome / Metatranscriptome	250	Y
F017060	Metagenome / Metatranscriptome	243	Y
F017262	Metagenome / Metatranscriptome	241	Y
F023530	Metagenome / Metatranscriptome	209	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0314827_105475	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	1004	Open in IMG/M
Ga0314827_105834	Not Available	973	Open in IMG/M
Ga0314827_106033	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Thermoguttaceae → Thermogutta → Thermogutta terrifontis	957	Open in IMG/M
Ga0314827_106294	Not Available	939	Open in IMG/M
Ga0314827_106326	Not Available	938	Open in IMG/M
Ga0314827_106439	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae	928	Open in IMG/M
Ga0314827_106803	Not Available	904	Open in IMG/M
Ga0314827_108362	All Organisms → cellular organisms → Bacteria → Proteobacteria	814	Open in IMG/M
Ga0314827_108448	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia	811	Open in IMG/M
Ga0314827_108485	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Enterobacter → Enterobacter cloacae complex → Enterobacter hormaechei	810	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0314827_105475	Ga0314827_1054751	F105419	MRKFIALSALLVAAAASNGCISTTMYGCEITETLAPGASEGEVVMKHGAPDNIVYLGGQYFNPQTGERGEVDKYLYEYRIGGGTTLLGKVFASDEFHNIAYLIEGGRVMGGGYVGEGKGSIILGNDFGVLNTPLGTMDLRFGGFLHPKA
Ga0314827_105834	Ga0314827_1058341	F072453	VEISGWTLIALACVVLVNTLFIVGLAVALFMLNKKIDEALDKAAPLLQKATETLNQVEETTSQLQQRVDRVLDKTTRLVDQVSERVDTTTAIAEEAVTEPLIGAASIMAGINRGLRVYSERTSEKGNGK
Ga0314827_106033	Ga0314827_1060332	F010686	LRGLDLCGQATKGTWGMSWRQKAMKGVEDCEKPGGIVKQVMIPGFPN
Ga0314827_106294	Ga0314827_1062941	F016001	VFSRRLDPIPSWACLLQVFALDAVGTPSRSLTLMILMATLSSHCRHRPSAFRHRAWLASLEAAYLLEVLDLPATPSCPEISDEVRRSASPNPLRDPVP
Ga0314827_106326	Ga0314827_1063261	F023530	RTILLLVAAAGVLARVHHHHAKGTAAPPVPNFPLDWTANEEDYMVVYQGQYSVNNGLYCCGDTSCEVQTQYQSGTNYFDFTHNRTRFDDPVNGDIVSLFYPVYKEMAVDNTNTCTAYCPIQEDISPYGIAPNSTYQGQKVINGQKYDDWQYVDKEFGIVFETDDIFVVPSTQLPYQEVDQLTPFGQAIGQSTSTYHTFTPGTPDPSKFDVKGVENCPQSQNCGNSQRQFVRRRWNQWKTWMQAYQQNGLEKAEQISRRMARH
Ga0314827_106439	Ga0314827_1064391	F001633	VGVGVRHTLFPGGTRLDTLAFAGVVLPDATLCGMQMFRSHGGTVLTVAGRDLSSEASAPGSDAPCRERRAGRGADTPATFVVSRRHPYHGDGTGFWPIVGPALRV
Ga0314827_106803	Ga0314827_1068031	F030637	PVPSSPLRRFEDSMRCPVSCRQATGTSREVGCSPEFYEHGPCRLVGLPAATSTLRFPARPGGSTFRVVPRLLAKTGSSSPELGLLFRVRTASNLPLARMRGAPSLGSRSQSRCQPRRSTCERGSQPRPTFRPRRFSRPRRFSLSTTSWACFIPLPRPGFTFQGFVPATWPGRLVDGPCPPVVDHPLLSSRCRGDSRSGDLAFRALIQLAIRSNRRSV
Ga0314827_108362	Ga0314827_1083622	F043340	MIERIRKAGWLTVEAALLLIVLCVLLNIILGSESGPFISAVAGNATQLLQAIPPGTLLGVLLIVGLYWLVRGRLSGQS
Ga0314827_108448	Ga0314827_1084481	F000344	MRPKHPHAVESGVGKHITRESERVQACAAGKERVTNAH
Ga0314827_108485	Ga0314827_1084851	F001633	FVTRSFPAAHAWTRSLFAGGVLPDATLRGMRMFRSHGGTVLTVAGRELSSEASAPGSDAPCRERRAGRGVDTPATFIFRVGTFYRGVGISLWLIVGPALRV
Ga0314827_108564	Ga0314827_1085641	F000344	MRPKHPRAAESGVGKHTARESESAQACAAGKERVAN
Ga0314827_108709	Ga0314827_1087091	F000203	GVRHALFPVPALGAALAGAAGFPTLFSTASGVFGLVAGPSNALLR
Ga0314827_108773	Ga0314827_1087731	F081897	WEFAKLSFPCRHLAPYLGMAAGFPTLFSTASGVCGLVAGPSSTLRMLNFE
Ga0314827_108806	Ga0314827_1088061	F000240	AAGALAAQDAWPYSAGITGYVPTSTPFDNPKTLTERTPTIPNSPDCSVRPQTVVEIQRMRESASRIAQMIEAEVQIMNKRKTFVEQMTTYLNDRIRELNKVKGELAEETRWIEVSTNRIQELAEREKLVKMQDILACLNGDKKTLADESSAQASTIEALKSQSEAVSKRIAEIKAKIEAAAEGKDAGGKGGDAGGEDKE
Ga0314827_109311	Ga0314827_1093111	F082185	MGVRASGLLANPTPVNTGVMSKVFHMYKGQTLYAQPWRMYNPGLRMLKAVKRDRYFQHYYPYSLDAKRGVKLDDTRWHPFVMRRWFRKKRRQGWVKTHRRRILPDYKQALAWLSQEQWDERLQRKGRYSDFNTKGTCLPAEMIDHYHTTGWYYTLETWPLQWEAARRRKEKMEYARGEFRDIWGNREYPVEVDNGSIAWFDEQTIEAAAAAKK
Ga0314827_109612	Ga0314827_1096121	F001633	FAGGVLPDATLRGMRMSRSHGGTVLTVTGWDLSSEASAPGSDAPCRERRAGRGADTPATFTFSRRHLYRGDGIGFWLIVGPALRV
Ga0314827_109940	Ga0314827_1099401	F033437	GGVLPDATLRGMRMFRSHGGTVLTVTGRDLLSEASSPSSVAPCRERRAGRGADTSAILLRVGTLTTGTAPAFGWPLALRYGSGLLTLRLRSLLQCGGVVFHAAP
Ga0314827_110541	Ga0314827_1105411	F090047	VARTPIEFTCQSCRKTFQSTDWGTVFPCPHCNEGLGRIQQLDQLLDQWFYPRRWRADLHEPNPFYLLEKLWTANGQGETLYNGIAPAHANYDVFRHLVTRLVAQGVDEGWVELEFPDDPLDENPVYQLKFNDPDRFAKGVERLFPEVDWDEQIEVPATEADDAMP
Ga0314827_110830	Ga0314827_1108301	F045595	MRKLLSIAGAMMISTTMFATPASAQAMAGGSCGMSSGDYGITDVNSAKVNNAGHTVPALFYQVNYAGVPAPTTVGVIVRYNGELETQLAVGSASAANSGGNIEGVLRANISPDNQGFANSINQARRGQADGPPDGNRGTRTQNSPTQGGLMPGEYVFYIYTGSVGDVWNVKDGTVARNAFIADEKGYLGTFSCGVSTDQGSGPG
Ga0314827_112073	Ga0314827_1120731	F057461	ARCRARRESYEMPIDLRSIIRFTAAVGTVTVLIGGCDFVQKEPQRSESGGEVDETFEPATITSIKGVAAGEVRTAIDQRLDRGRPKPITEAQWNHTKKLYAEFDGNPIWLDKDGIRERRTKTLMSALLASDADALALDAYPLEELNRVLSALLKES
Ga0314827_112363	Ga0314827_1123631	F025923	KRSGLKDDAESTAGIIPGDRGKAGDNWCRPPLPMAKAR
Ga0314827_112538	Ga0314827_1125382	F070535	MYQAPKLERLGTFREVTLAGGDFNPGDGGNPYHRYAPLPS
Ga0314827_113015	Ga0314827_1130151	F017060	MSRSAESHLQFASSNRDDLRTLFALSFSEPARNDDDLRHAVLDYVRAAKAERRTPEMVIVSLKRAIIDAAAARISYRAANELTDRVVRWFIDGYYEADGSTDRGLELRMAPAPRAS
Ga0314827_114290	Ga0314827_1142901	F017262	VAPKANCAPLCEETSCSWSCAKPTTCPRPKCELQCSKPACDVKDKQKCCKCGAKGVKRALAAAPRFEEVHGDAEMMPSFMEMVATFKHATENGVEECCPCAKKF
Ga0314827_115782	Ga0314827_1157821	F087976	ARDAQLKSEADAFKYKRELARVKRAQADRLREERRKCAGKCDREFPILVGPKNVPAKETRSVVVIGDRAANRKRWSAVSTHKRMFWHPKGLKKTARHITKAGRRIAAAHAKTKRISEAPLVEKPLF
Ga0314827_116271	Ga0314827_1162711	F001633	VLPDATLRGMRMFRSHGGTVLTVAGRDLSSEASAPGSDAPCRERRAGRGADTPATFTVARRHPYHGDGINFWLIVGPALRV
Ga0314827_116551	Ga0314827_1165511	F011252	VSEYTFIEPNAAFPLPATFNFDEYIETERELWALFPETDGRRVNFVQIGLTAMIYAEVPDTGAELGFDETYILMPCQDFAMRPIRMRACRRLTLSEYRMGHLTAIKLVGKVNEAGEVMREIGCQILGDEVLSEAQARLSEEQE
Ga0314827_116584	Ga0314827_1165841	F053640	VAAQRSEMVAESTTGIIPGDRGKAGGNWCRPPLMPAKAVMRHISPVPLAGVVSGQSTHELGTEPQAAIRNRVEWSQATQGVSTCASTQLPQRLRLLLRRPERHRVSRRDDPAKRPHSPHEWGAQGTYGGGERTDLGKVREPPHRGGVKHTSPSCKRQRSLRGKRSDR
Ga0314827_117060	Ga0314827_1170602	F072453	FGRPNHASAVSEDLFVEISNAAIWALTVRVLLNTLFIGGICVVLFLLNKKLNDALAKAEPVLIRATETLGRVEETTVRLQHKVDEVLDKATELVEQVSERVDTTTAIAEEAVTEPLIGAASLMAGINRGLRAYAERSHEKGDGRS
Ga0314827_119866	Ga0314827_1198661	F075814	RTHRRYEVSRRNESVNRPTKCFDAREVGVVQLGTGSYDITVQVMPHSSFNQTTRLTLSSVSPSSAPAVSGGTLVDSVVFQLRAQSSCDGADINPLPNLANMGIVYNVPNAVDKSKLQIVMWNGSSWTNIDTVPDPVPGNPYVSATVNMAGTYALIQKP
Ga0314827_122124	Ga0314827_1221241	F042753	PLRRMSTEFDHESIEKERLAHEQERLTRHVVAPGARTEFEKSDNLTQRTQAVEDAKVRAMMEKKASLPRFDPSNKDAPGAFKTLDAFEVQTLVTLRNNEFTQAFNSGNIAGLHDFFTRTGGVVGVGGKEFSGKADVTAYFQRLRDSGVKNLKHTPGNYKAESDRDVQEW
Ga0314827_122696	Ga0314827_1226962	F102642	MTLAVFFNEEPLSERRRKAGQREHLKREGNNVLAGRGNTFRNVGDVEKGTAGL
Ga0314827_123139	Ga0314827_1231391	F027649	KMGSSPQPPEPAAAKSEEVNMAYGLDPRLFLENGPANQAAAAHARSSSDSYRAWAGLDAEHRFELVERALRNAANDRIGLPIAL

Showing 1 to 33 of 33 entries

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300031476: Metatranscriptome of soil surface biofilm microbial communities from soil inoculated with nitrogen-fixing consortium DG1, State College, Pennsylvania, United States - MICR_R6 (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences