Sample 3300031189

Basic Information
IMG/M Taxon OID	3300031189 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0128781 \| Gp0267097 \| Ga0228576
Sample Name	Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P3_L6_16mM_1 (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P3_L6_16mM_1 (Metagenome Metatranscriptome)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	19106628
Sequencing Scaffolds	18
Novel Protein Genes	24
Associated Families	21

Dataset Contents

Total Genome Size

19106628

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	10
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales	2
All Organisms → cellular organisms → Eukaryota	2
Not Available	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	2
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales

All Organisms → cellular organisms → Eukaryota

Not Available

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila

All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae

Ecosystem Assignment (GOLD)
Name	Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa
Type	Engineered
Taxonomy	Engineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa

Ecosystem Assignment (GOLD)

Name

Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa

Type

Engineered

Taxonomy

Engineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Unclassified

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Unclassified

Location Information
Location	USA: Washington
Coordinates	Lat. (^o)	47.6519	Long. (^o)	-122.3113	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

USA: Washington

Coordinates

Lat. (^o)

47.6519

Long. (^o)

-122.3113

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F009790	Metagenome / Metatranscriptome	312	Y
F024700	Metagenome / Metatranscriptome	204	Y
F035605	Metagenome / Metatranscriptome	171	Y
F039966	Metagenome / Metatranscriptome	162	N
F043264	Metagenome / Metatranscriptome	156	Y
F044865	Metagenome / Metatranscriptome	153	Y
F048727	Metagenome / Metatranscriptome	147	Y
F054473	Metagenome / Metatranscriptome	139	Y
F055416	Metagenome / Metatranscriptome	138	N
F063303	Metagenome / Metatranscriptome	129	Y
F063376	Metagenome / Metatranscriptome	129	Y
F069666	Metagenome / Metatranscriptome	123	Y
F074330	Metagenome / Metatranscriptome	119	N
F074505	Metagenome / Metatranscriptome	119	N
F087102	Metagenome / Metatranscriptome	110	N
F093418	Metagenome / Metatranscriptome	106	Y
F095000	Metagenome / Metatranscriptome	105	N
F098503	Metagenome / Metatranscriptome	103	Y
F102393	Metagenome / Metatranscriptome	101	N
F104431	Metagenome / Metatranscriptome	100	N
F104622	Metagenome / Metatranscriptome	100	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0228576_100807	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	1961	Open in IMG/M
Ga0228576_103006	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales	1167	Open in IMG/M
Ga0228576_105209	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	899	Open in IMG/M
Ga0228576_105328	All Organisms → cellular organisms → Eukaryota	887	Open in IMG/M
Ga0228576_107024	Not Available	765	Open in IMG/M
Ga0228576_107201	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales	755	Open in IMG/M
Ga0228576_108496	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	685	Open in IMG/M
Ga0228576_109660	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	640	Open in IMG/M
Ga0228576_110201	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	618	Open in IMG/M
Ga0228576_110746	All Organisms → cellular organisms → Eukaryota	599	Open in IMG/M
Ga0228576_112405	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	549	Open in IMG/M
Ga0228576_112627	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae	543	Open in IMG/M
Ga0228576_112659	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	542	Open in IMG/M
Ga0228576_112800	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	538	Open in IMG/M
Ga0228576_113192	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	528	Open in IMG/M
Ga0228576_113213	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	527	Open in IMG/M
Ga0228576_114076	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	505	Open in IMG/M
Ga0228576_114161	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	504	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0228576_100807	Ga0228576_1008071	F074505	VKILIRKRRISCVPFFLRGGTGRRCRAPWRLQTRSGRPVRASRRRPWSMPTTARANRTDGDAEAGAAEAEKCKKARVTLPVLSVLQTVLQHAAEALADKTKELSDVLGSINNDQLVAEPDVWLQPHPQRTRRRTADGSRTAQIASHGRLTACRSRLMGYPDRADDRRASLFLRRGALCILACVVQGILCA
Ga0228576_101166	Ga0228576_1011661	F054473	RRAAVAHGCRSMAYVNESEFNSAAGLSSDEIFFANTADLVRRVKPVTRKSGYSGVTDVDMVVFGHDLEGGDKDGASMMKDKEFAGSAGASSAQIHTFHSNSRSAPKDVPQMRDQMDNIVFGHEMQDSAGQKRAEELFFALQKGSAGEATVEIGSRSFPSRLEKSSAVGGPAYAWGTLGNRHNEPRGDLKGAIPTDHAGPQYPPNYKGALGAPRDMLARKDCDANYTVGASNQVVKPRHRNDMDSSDARAILEENYRPDKTTSYGTLKSSHLLAPDEKVLGAAGKASRMINDYNAGPFTWVDVDTEEERRLSEFNAGSQKVADILNGDGYLERDTDPKAKMIPDEYNAIKGRKVDKATAAIYAKQRELVCGDSIAKLNILQPDLNYAMIDKDGDGVIEADEIAAAGGMQGYVFEDAKSEFEVMMQQKSFGQPKPFGSDPIDSWYGKPDYTTTRKDVERTVQSKLAAAQQKHLSYKPPTATPEGMRRHNFQPAPTIAEAIGTVRQEKVAYGTVHRNAPFGVDEADFNMKYETSSLAGPGNWDQSMASRIARRRLIGSQERGGQKSPTATG
Ga0228576_101456	Ga0228576_1014561	F009790	APSGQWRSTNHGYNSKDVVLGAGFAQYTPGLCDDEVYQTVISGSLGNSGGYKKAVVGDGSGRMFGQTADAQQGGYNGAEMDEAMNNDMTGVTEAGYADKIATGFDKVAGDYSTLPRWMQEIFIKLRVLAKSEGIDMERTFQDAGGSRFGTISKRLFISALCIGFQHYRFSPAELDAIADAYGCGSDDIFNGGKMLVAWRDFVNDVLSAEVVAKEYEYSATDTDETDAGYSDGIATGIDKIAGGFDDLPPMLQQLCKDLRRMAKIEGISLEFSLQQAGGTRFGTMPKRHFCSALTIAFHHFKFTPEIYKALCDAYAVGPPDFAEGGKEEVAWRDFCNDVLSSGKDISAHGVQAIDLAAKYDPKKNASFNDSALAGLF
Ga0228576_103006	Ga0228576_1030061	F044865	RNPQLTVLPHASDIKWIDQFPYYPAYRYHSYRSYCGACSSILFLTILLLRFSTSIMDFVNRPPIVTEAREQFERDSTITYRLPRVGVQFRQNGWRPFNDPRYLSIIFEQGVIAMSGNVSYVDLGTHECAFVDRDGRLIADGAMCPLASGDAAGYLQGDFHDVTFAFVRARLARCDNGTDVEGKPLPGMCMMPSEIDRLVYDGVLYMFEQETDMRVDESSPFLRIRQWRREFISRVHLSTDVYFTVRKVTVEPKYIFDAYLPGFKAGDSFTLLHSTQETYTDFEEEAAQYAAFYFRLAPELIRQSRSYTSLFDLFETWGAIVAFLYLVFGLTARSFNAFHFNRQVRGLDLRKLDKGQFTPFGRLIDKSFQMPREFQSMTAD
Ga0228576_105209	Ga0228576_1052091	F102393	VCSCFFEPPFVGGRHPYWPPASSTRMILCCKPSKFNVTCWSFLTLLSACVILACAVTALDASKGFKDATMCILTNMVDLTNSDMTGGNMTDVPVMLDPRVLNVASAVIDWWMYAMIAPGAAYFVILVIAVFFSCVAALCSKCCASVTSKAFIFLGWFVAVVTLAFFCVCAVLGIFTQIPMTEAFWIENVESPCNTSVVESTHQFNLANASAQDCVRLYGQSNCADSTQQLNNAAEQLTKFTLMCSCASAWLYKSKPLAAPGVVGALATLLAFFLSLGTCCTLACCYSFTAAMEKNEPKK
Ga0228576_105328	Ga0228576_1053281	F063376	KEPVPQTAAYAKWLKAQLVQGHVVAWMIMWSGQDYPIYNLVPPAGMYGHVEPVIGIQSNHPLNDTTVYDDDVVVHFTDGGVNTVHRPISTLPCKWAGMGKPADCGEYSYGVGNPYGFGWAAKGFTQDPKPYQLAALKIQPWEREPDTRSGEKPEPLAGTLTAYELTPGATYDIYRWDSVKEAFTYTNEYKKITFAATTDTYVYTDDKSFMSEGTTYYRVVKA
Ga0228576_106236	Ga0228576_1062361	F087102	AFSVVYDETIDAVFKADSRAAGLAKLRPYLDANMSKESADAFQECCGKLFVLSRVHTSMAPEISFAKVQEITDTLSRACSMASHTAAPLIAGLKRFVEQRILPNGALDHITKQGFRLPADEVGALLDRYHWPHDAKRTQVMHILRKTLKAVAELRTTSDAAVRDSESIEEARLTLNHSHERLVRTMESVLDEHATRLDPTLVMGQNLFLAVSRVAQAQEQENVHRLQSRSWPPLHSRVQTVVAEAEAREKAAVKAEAKAKARVAEEVAMAT
Ga0228576_107024	Ga0228576_1070241	F035605	DQVITAATYITAERYTPAAAPPKGVSPEVHREWLMTWEMLQLSALPGFPLWEKDVHDVLAGNLESLTSIFRAYAASSLEGSATEMDMEEFHDFVIEAGLITDMYSFDTMSGQFTKANAGSNDTVLELHEFLTMLVRISFFRANPQYGMRLGKDQKNADKFGEEVPLPGCLSDMLTNLVLPNARHDTYAQEFAETTLPLPEVQAALGAQLEKLSQFYELVSAGRPFLELDQWLKTLEGKLLFSDIMVDGYVVRLT
Ga0228576_107201	Ga0228576_1072011	F048727	RERRRTGTAMSFAMAVRFNTTVSAADARMASMAYAQRIAEERLKRSQERSKWYQLSEEERSEILFPAPKKIQTEYNDATPEQQRQVESHFRGEGMHWRPPAQSQKVTINDLVKLDPVNPINRAPYQPRKPWHAGGGGYDTAMAC
Ga0228576_108496	Ga0228576_1084961	F039966	AKMTDGKERVRLRARECEAVEWTRRVAQRAGTLKDMMDDAPPEDGVYPVPTIAAAELAVLREMCEADSMPARLEQCSISELFRLVEGASFLDAPGALNHAQRALASRLNGKRADELTELLGATDGFGSAEERVAALAEPAFSPEGQLSEAEVGSAGGAPALQPQLTLWMAVTDDAKEVALGMVDVVTLAELKGVSRSWLALARRVLCSRLGRCEGLPAPTQMAEITD
Ga0228576_109660	Ga0228576_1096601	F074330	RNSLESTSQFLESAMLNSTSTGFLLVTSTVVLIASLFLTNDPVDTCAVSGGMQYCVGWNNAYAFVWSIMEIVLCAVGLVALKYKPDLLSKVLVAKVPLLYAPITVESLLSFVLFLNATIGALIMTNQPEHGFDQTNNGYFACWAGVCAALGNIGVDAIKNGEDIAKKGVSPAWGIIISSIMVLLQAFPYIVFDTTQMPSGPPRPLWRINPPPM
Ga0228576_110201	Ga0228576_1102011	F095000	FQHMIGANAVFEIEDFLQADALVCASHVFCAAGFEWKLWVKPYSGPNEEHVGLYLTPAEDLDQVYTADYALAIVGRQGHILQRALDGGRPKLQGRKAGHGWPTFVTRSELEASATDPASCLLQADGRLIVTCSGLSNVRPRMPQDDAAGLARTL
Ga0228576_110350	Ga0228576_1103501	F063303	MFKNKDERFKKSMELEYAAHVGPGSYSQAEGTVELAFKKQSGKVSSAFASTSLRGDSFIP
Ga0228576_110746	Ga0228576_1107462	F024700	VALMPPKGTPRVSSLYADMDLTGVVSTLESHWVVLDAELSEIRKDFAVLRALTRKHGEFWMRPMAQLKKLRTQKENLLKEIKFQMELFNLHIQQGRDLCTKLSSVASVIKTPPAQLQSQLAIEVVSPILANSQNPLPVTNAW
Ga0228576_111672	Ga0228576_1116721	F093418	SAEDAAEMEMAEFKDFVDECGLETKQISFDLMSNNFMKANAINSAQVRDAHQEGRRSAGTKMDGRTTAEVATQKRNDGSETKKDAELVLYEFIGMLVRIAFQRANPTFGNYGNKKAVVHLVNYPGSGMEGNGCLQTMIEDEILPRARKDTSAVFRETVMTEMSVVKVLDEYRPKIKAWYDLTCADDTKQ
Ga0228576_112405	Ga0228576_1124051	F074330	VLIASLFLTYDPVDLCAASNGLKFCVGFNNAYAFVMCIMEIIVCVVALFMLKMKQAILQKVLVAKAPLIGPITVEGLISLFLFVNITIGAFILTNMPEHGFDQTNNGYFACWAGACASLGNIGVDPAKMVDDLRAKTGVSPAFGLIISSIMVLLQSYPYLAFDPTQMPADGGPWRPVPVWHSN
Ga0228576_112582	Ga0228576_1125821	F093418	GSDTAEDAMEMEMSEFHDFVVECGLETKHVSFDLMTNMFIKANATNSAAVRDQHSEGRRSAETKMDHLVGKGDTLATGRTTKVVGKVKGTNDGKEAKKDAELVLYEFMNLLVRIAFQRANPTFGNFGDQKPVKHLPGCLRTMLEDEILPRARKDTSAIFREKIMSEMSVLKVLDDYRPKL
Ga0228576_112627	Ga0228576_1126271	F055416	RPVLRDAAARLATTMLRGRHTPHRPPARRLCALQESAAIRCNYPETYAYLKAKRDRHPIEDALEDYTQWTVMGEPLHPKITPIPKPGQPKPVEASSAIKKEETEEEYIRRRCEEFMHKSLSSRRGPGGKMFTIGGGGDAGVAYQVI
Ga0228576_112659	Ga0228576_1126591	F098503	PKHLTCDRFSSDYPEPGSMKIKKPDNRLTLTEFLGCLVRIAFLRANPKHGQYDNKAKLVELPGCLKKMLEEVLIPNAKQDMSSLFREEIAQDAEVQRVFDEYREKLTYYYNEVNQLTALKGKADNKLSMETWMDICRGYLHFAKRKGLKHMEKSKTSGKAVGV
Ga0228576_112800	Ga0228576_1128001	F087102	RPYLDANMSKESADAFQECCGKLFVLSRVHTSMAPEVSFAKVQEITDALSRECSMASHTAAPLVAGLKRFVEQRILPNGALDRITEQGFRLPVDEVGALLDRYRWPHDAKRTQVMCILRKTLEAVAELRATSDAAVRGSESIQEARLILNHSHERLIRTVESVLDEHATRADPTLVLGQ
Ga0228576_113192	Ga0228576_1131921	F043264	MSPQTPLMPNHRRELQTAVSTSAGLLSALANTGVGRIVLDPGTYFLNAELSVTRSVVIEAAVAGSVVLDAQASSSSRRRVLYINPGSLGVVQLIGLNTTRGYVQGLDG
Ga0228576_113213	Ga0228576_1132131	F104431	RKFYPQRTRLCTAKSIAHMVPIKLHLLAEERRPRGVPASRLEGVVVRKGKGKGKGGHAESLLFDPGQAHGCLKHFEHVLAAPPPGELQRAMVLDVEASTAPGTFAKVVVVYPAKEPKAIKALHSVRDASRMLAELNIPKRCDWAGGGTMVGGGCMLTRDGLLKPNYAVKPGCQLP
Ga0228576_114076	Ga0228576_1140761	F104622	TVYGCEFLASLLVFVAGWVADSDLEGSLMLAVRAADIMVYCAFIPMILMGWDNLVRPPLKTFLKGEGGTLETLYLMFIALLLIPVTIAQTMFGFGGGSTDLAMSVVGAMDMVAGDVAATADETAEEEQGGGDGAGAADRVEEFQPLEDDAAQVA
Ga0228576_114161	Ga0228576_1141611	F069666	GLARLHGYGYVVDVAAVRAANLRNSLGDRTGILGGTAKAVLNSCISGEGEPPLRLTIAAIACAGSGVICGIPVQRMREDSVTTLDLSGRGLHVHVAMLVAYLLPATSVLKNCKLLKYRYNLGIQPAMMLAKIGAERGIMLSGIMLTDQKEADLSCQYLQPADAILIAS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300031189: Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P3_L6_16mM_1 (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences