3300030757: Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PO 4A (Eukaryote Community Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300030757
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0068071 | Gp0125782 | Ga0102768
• Sample Name: Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PO 4A (Eukaryote Community Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 171053313
• Sequencing Scaffolds: 15
• Novel Protein Genes: 18
• Associated Families: 16

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria → Rotaria sordida	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Alismatales → Araceae → Pothoideae → Potheae → Anthurium → Anthurium amnicola	2
Not Available	8
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Evosea → Eumycetozoa → Dictyostelia → Dictyosteliales → Dictyosteliaceae → Dictyostelium → Dictyostelium discoideum	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): forest biome → needleleaf forest → forest soil
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: New Mexico, USA
• Coordinates
  • Lat. (^o): 35.8911
  • Long. (^o): -106.2978
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003556	Metagenome / Metatranscriptome	479	Y
F007739	Metagenome / Metatranscriptome	345	Y
F010442	Metagenome / Metatranscriptome	303	Y
F012187	Metagenome / Metatranscriptome	282	Y
F015889	Metagenome / Metatranscriptome	251	Y
F018114	Metagenome / Metatranscriptome	236	Y
F019606	Metagenome / Metatranscriptome	228	Y
F023044	Metagenome / Metatranscriptome	211	Y
F024036	Metagenome / Metatranscriptome	207	Y
F030647	Metagenome / Metatranscriptome	184	N
F035138	Metagenome / Metatranscriptome	172	Y
F071788	Metagenome / Metatranscriptome	122	Y
F085201	Metagenome / Metatranscriptome	111	Y
F086396	Metagenome / Metatranscriptome	110	Y
F087439	Metagenome / Metatranscriptome	110	Y
F094693	Metagenome / Metatranscriptome	105	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0102768_1013348	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria → Rotaria sordida	518
Ga0102768_1018652	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Alismatales → Araceae → Pothoideae → Potheae → Anthurium → Anthurium amnicola	560
Ga0102768_1022612	Not Available	1397
Ga0102768_1029959	Not Available	595
Ga0102768_1033413	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Alismatales → Araceae → Pothoideae → Potheae → Anthurium → Anthurium amnicola	582
Ga0102768_1043228	Not Available	795
Ga0102768_1127582	Not Available	578
Ga0102768_1489390	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	613
Ga0102768_1518216	Not Available	515
Ga0102768_1527129	Not Available	504
Ga0102768_1529603	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	530
Ga0102768_1587383	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	613
Ga0102768_1606412	Not Available	504
Ga0102768_1635741	Not Available	627
Ga0102768_1636236	All Organisms → cellular organisms → Eukaryota → Amoebozoa → Evosea → Eumycetozoa → Dictyostelia → Dictyosteliales → Dictyosteliaceae → Dictyostelium → Dictyostelium discoideum	941

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0102768_1013348	Ga0102768_10133481	F023044	ALASVLGGLSGLLGGRAGIDLGAIFSGFLADIQGAVSGIGQHVLNQGLASVLGGLGSLGGSRGVGDIFASLSSQIGAAVTAAQGALTGALGSLQQLGGNILDASKPHWEQLQEQLVGHGLNVLGSISETVNNLHGSITGGR
Ga0102768_1018491	Ga0102768_10184911	F023044	GNIFGSVQPVLDQLFQGLLSQLTGSLAGIFGGRAELGLGSIFGDFLASIQGQVVGIGQHLLNQGLGAVLGGLGNLGGSRGVGDIFASISQQISSAVSVAQGAVQGALGGLQSVGASLVDASKPHWQQLQEQLVGHGLNVLGSISETVNNLHGTITSGR
Ga0102768_1018652	Ga0102768_10186521	F003556	SDEDYMAGKLLSAAYEHRHIATLRTLLMETADQLSSSPYLDMRNQAMAYKYTAEELKAMTINAEVIDPDYFGSFLRRVYGVWESDLVQCYISVCDGILGFQRVNRVKNKNAPPLAPRIPRALWDTAFENIVTVDVSL
Ga0102768_1022612	Ga0102768_10226122	F010442	MMHSSFFASLLVAALASTIFADTTSSGNRQCPGGYDNGKQMNIGRYWYECRDGQVIPKGCLTPEDSRIDIDGTFDTNQYRMQCVMGQDGFLSLTYKACMHKGSEHDVGAQWDNGVAYFTCVKEGNNVRVITLGCVDQGKQMKLDDRVAKGDFIFQCKEATDGTPKMNKVGCMQEGRKYNIGETFEGPKWWYTCTDSGAKVVGCMYQGHRLVDGDHFTEGDMMYSCRVRADKTFFEPFACLQREENGASIERKVGCFWVEGQGSNAFEYTCKPDNNNLISKVQVKCVYRASQGNFKLEPGCVQQAGDIAVGCLQDSSSGKLTIQTYSPDQMGSLPGLHKC
Ga0102768_1029959	Ga0102768_10299592	F030647	EIETRLGCPVLNSDHVHLSDMTVYMTSSSVHLSFVIQHGGKIKPKIGPKVIHILLALEKLLILLKFTAFIETCFPIKSRSTTLR
Ga0102768_1033413	Ga0102768_10334131	F003556	LTYTSQDRTKVEKSFKEVAEGSGMSTEGVYHNVREKATFLRKRFVPSYRRTFPVPSFGRVVCKLPVRCNNNRAVSDEDYMAGKLLSAAYEHRHVARVRELLLQTAEQLSSKPFLDMRNQASSYKYTAGELKEMTVNAETINPDCFHEFLLKVYGIDEDGLVDCYAAVCDGILGFQRVNHHAKGKKDKHPPLAP
Ga0102768_1043228	Ga0102768_10432282	F018114	CIFEGAEHDVGSQWDDGVAFFTCVKEGENVRVITLGCQDQDKPLKLDERVAKGDFIYQCKKATDGTPRMNKVGCVHEGRKYNIGETYEGPKFWYTCTDGGSKIVGCMYESHRLRSGDHFTKDDMMYSCKVDDDRTDFVPFACLQREENGAAIERKVDCSWVEGHGSEAYEYTCKADSGKVAKVQTQCVYRAPQGVLKLQPGCVQLAETVAVGCRQDAESGRLQIETFSADQIDNLPGLRQ
Ga0102768_1127582	Ga0102768_11275822	F019606	VPRFKLLAKRKRVISGVLIRTGQKPGRGAKENAPRLYRMPCSSRACRLESEFLDGSLG
Ga0102768_1489390	Ga0102768_14893901	F024036	VNYFFFERXNISELDEIRFYGVAPHXYFRPLMGLLVISPTHYEGLMXMGLFFILMTLLPIIYNXYNPYHKHIPTIPMQNSLIQTFAFIIFTLSIFCAASMLPCGRYYYEPEGGYVGNPXVKFSFQYIYLYMAXFIHHLDLIDHYIFQFFQTFIRKTLKTYKKYNYLFKNSISKFVTFGNIHKIYNKLIFKNINYSLNLKKKKKK
Ga0102768_1518216	Ga0102768_15182161	F085201	MPIFSKPHQKTIKLIINVKSDLKLEKERGDGIALYQEKYECYVQTSKYVAYGLGNLEKQVAIDLIKNGRDSELDRKDVVYDSDEQMEDRHYEKDEKIDALDTDLNWLPSQVIDVHPFKGVLIKYEGWSDKWNEWIPTWSPRLAKVGKFS
Ga0102768_1527129	Ga0102768_15271291	F007739	TKRAAKNKIDVVRFKIIPGDWGKAGSGWLTGLLSNRAERRGSGGRIHQFLWRYSRTVKMRMRDLAARGNEKLPRVE
Ga0102768_1529603	Ga0102768_15296031	F015889	ENVVCHSMLWTTTFVLCLLGIIFLFVGVIFSFWDMFQISDRRFVIPMLYFVGVVLMTAGLFDYGSRALINSHSSRCMLSAIVFGYVALPIAAFIAGRYSAYDRFVNNGHVHNGQKYVPASTNGN
Ga0102768_1587383	Ga0102768_15873832	F071788	QVSREAHVKPKQLLGYAAIAFVLFFVIKDPAGAAHIVSNIGNFLSSVARGFTDFFNSL
Ga0102768_1606412	Ga0102768_16064121	F094693	QVLPKVPITSTNVAPSWEVPLDILYKRQAAAKTDAEKESIKMMIDDMIEKRGHLETIIKKIVTRVSVSREHIDRLFLTRPQQLNNLECHHQLVKSFSRHCFDLGKNTYALKYAYVLANICEDGTMDTDNVIRTMRQVCKAVTIKERID
Ga0102768_1608810	Ga0102768_16088102	F086396	KKVIEDISKPHELKKTSGPPAESLSQTQAKVLIEVTKKPDLNHVDAPSTGLSAADKEAYIAEKKSRELYTVHTQ
Ga0102768_1618375	Ga0102768_16183751	F087439	TTHLTKVLPAMPTPPPNVQVRNAPDYATLERTLNGLGLTASMFQ
Ga0102768_1635741	Ga0102768_16357411	F035138	LAATPSPPTWPVAFSASILHTDRFGGMRFSRWFYDSGNMVERFDGLRMWQGEMYWIEDIRDYTSDVNTFMAFMQEEVSCFTGPVNGTMIKPNFNDFQYAGLSFVGFTKCNHWFLQNQNQGIQIQLWDDANTREIVRIDVVNENIGMAENWTFMEMDIGAQDSNLFVVDPNIAPICNSF
Ga0102768_1636236	Ga0102768_16362361	F012187	DSIVSAGVGPAWKAMSSTVEGLRPQIEPKIKELVDPIGKAEAELINKIKDAAMSVINPLLEKHVVPHLSKIMEIIQSPMTEAYDESYKQFDEQLNKFEMKPSKEELSKAFKTLDYYPRSWEMYHVTRKIDILYDPLWALNVIFTDIYPWSLIWRGHDELRSTMDNAIYTWESKVLKSCEGNDSALSEGKALADRMKMETMEDFKFDGRLKTVAWYCEIIKKIIMPPFDAAIIPACKEIISPISEAIPEPMKQFIDIEQLFDDLINGIIDDSIKTVVQSGQKSD